Package: treespace
Title: Statistical Exploration of Landscapes of Phylogenetic Trees
Date: 2019-12-05
Version: 1.1.3.2
Authors@R: c(TJ = person("Thibaut", "Jombart", email="thibautjombart@gmail.com", role = "aut"),
 	     MK = person("Michelle", "Kendall", email="michelle.kendall@bdi.ox.ac.uk", role = c("aut", "cre")),
	     JAG = person("Jacob", "Almagro-Garcia", role = "aut"),
	     CC = person("Caroline", "Colijn", role = "aut"))
Maintainer: Michelle Kendall <michelle.kendall@bdi.ox.ac.uk>
Description: Tools for the exploration of distributions of phylogenetic trees.
    This package includes a 'shiny' interface which can be started from R using
    treespaceServer(). 
    For further details see Jombart et al. (2017) <DOI:10.1111/1755-0998.12676>.
Depends: R (>= 3.4.0), ape, ade4
Imports: adegenet, adegraphics, adephylo, combinat, compiler, distory,
        fields, htmlwidgets, MASS, methods, parallel, phangorn,
        phytools, Rcpp, rgl, RLumShiny, scatterD3, shiny, shinyBS,
        utils
LinkingTo: Rcpp
Suggests: ggplot2, igraph, knitr, pander, RColorBrewer, reshape2,
        rmarkdown, testthat
License: MIT + file LICENSE
LazyData: true
Collate: RcppExports.R metrics.R medTree.R treespace.R findGroves.R
        plotGroves.R plotTreeDiff.R servers.R transmissionTrees.R
        data.R makeCollapsedTree.R relatedTreeDist.R simulateIndTree.R
        tipsMRCAdepths.R treeConcordance.R
RoxygenNote: 7.0.2
VignetteBuilder: knitr
URL: https://cran.r-project.org/package=treespace,
        https://github.com/thibautjombart/treespace
BugReports: https://github.com/thibautjombart/treespace/issues
NeedsCompilation: yes
Packaged: 2019-12-08 22:06:02 UTC; michellekendall
Author: Thibaut Jombart [aut],
  Michelle Kendall [aut, cre],
  Jacob Almagro-Garcia [aut],
  Caroline Colijn [aut]
Repository: CRAN
Date/Publication: 2019-12-08 22:40:02 UTC
Built: R 4.0.2; x86_64-w64-mingw32; 2020-08-02 17:41:58 UTC; windows
Archs: i386, x64
