# Pedigree Inference from SNPs

## Documentation for package ‘sequoia’ version 2.0.7

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

CalcMaxMismatch | Maximum number of mismatches
CalcOHLLR | calculate OH and LLR
CheckGeno | check GenoM
ComparePairs | Comparison of all pairwise relationships in 2 pedigrees
DyadCompare | Compare dyads
ErrToM | Generate error matrix
EstConf | Estimate confidence probability
FindFamilies | Assign family IDs
GenoConvert | Convert genotype data
getAssignCat | Assignability of reference pedigree
GetMaybeRel | Find putative relatives
GetRelCat | Pairwise relationship
Inherit | Inheritance patterns
LHConvert | Extract sex and birthyear from PLINK file
LH_HSg5 | Example life history file
MakeAgePrior | Age priors
MkGenoErrors | Simulate genotyping errors
PedCompare | Compare two Pedigrees
PedPolish | Pedigree fix
PedStripFID | backtransform IDs
Ped_griffin | Example pedigree: griffins
Ped_HSg5 | Example pedigree
PlotAgePrior | Plot age priors
SeqOUT_griffin | Example sequoia output (griffins)
sequoia | Pedigree Reconstruction
SimGeno | Simulated genotypes
SimGeno_example | Example genotype file
SnpStats | SNP summary statistics
SummarySeq | Summarise sequoia output or pedigree
writeColumns | write data to a file column-wise
writeSeq | write sequoia output to excel or text files