Package: rSEA
Type: Package
Title: Simultaneous Enrichment Analysis
Version: 2.1.1
Author: Mitra Ebrahimpoor
Maintainer: Mitra Ebrahimpoor<mitra.ebrahimpoor@gmail.com>
Description: SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to the threshold c", where c is selected by the user. Family-wise error rate control is provided through use of closed testing with Simes test. For more information on closed testing with Simes see Goeman et al. (2019) <doi:10.1093/biomet/asz041> and for more information about the properties and performance of SEA procedure see Ebrahimpoor et al. (2019) <doi:10.1093/bib/bbz074>.
URL: https://github.com/mitra-ep/rSEA
Depends: R (>= 2.10), hommel (>= 1.4), ggplot2
Suggests: knitr, rmarkdown
License: GPL (>= 2)
Date: 2020-03-23
Encoding: UTF-8
VignetteBuilder: knitr
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2020-03-23 11:10:31 UTC; mebrahimpoor
Repository: CRAN
Date/Publication: 2020-03-23 11:30:02 UTC
Built: R 4.0.2; ; 2020-08-02 15:19:34 UTC; windows
