F2009                   Pedigree, adapted from Fikse 2009
FG90                    Pedigree, adapted from Table 1 in Fernando &
                        Grossman (1990)
LRTest                  log-Likelihood Ratio Test
Mrode2                  Pedigree from Table 2.1 of Mrode (2005)
Mrode3                  Pedigree, from chapter 3 of Mrode (2005)
Mrode9                  Pedigree, adapted from example 9.1 of Mrode
                        (2005)
Q1988                   Pedigree, adapted from Quaas (1988) equation
                        [5]
aiCI                    Confidence Intervals for Variance Components
aiFun                   Sampling (co)variances
aic                     Akaike Information Criterion
constrainFun            Function used in conjunction with others to
                        produce a profile likelihood for a variance
                        component
drfx                    Simulated design random effects
findDFC                 Finds the double first cousins in a pedigree
founderLine             Identifies the matriline or patriline to which
                        each individual in a pedigree belongs
genAssign               Generation assignment
geneDrop                Functions to conduct gene dropping through a
                        pedigree
ggTutorial              Simulated dataset used to analyze data with
                        genetic group animal models
ggcontrib               Genetic group contribution
grfx                    Simulated genetic random effects
makeA                   Creates the additive genetic relationship
                        matrix
makeAA                  Creates the additive by additive epistatic
                        genetic relationship matrix
makeAinv                Creates the inverse additive genetic
                        relationship matrix
makeAstarMult           Creates the inverse additive genetic
                        relationship matrix with genetic groups
makeD                   Create the dominance genetic relationship
                        matrix
makeDomEpi              Creates the additive by dominance and dominance
                        by dominance epistatic genetic relationship
                        matrices
makeDsim                Create the dominance genetic relationship
                        matrix through an iterative (simulation)
                        process
makeS                   Creates the additive genetic relationship
                        matrix for the shared sex chromosomes
makeTinv                Creates components of the additive genetic
                        relationship matrix and its inverse
nadiv-package           (Non)Additive Genetic Relatedness Matrices in
                        Animal Model Analyses
numPed                  Integer Format Pedigree
parConstrainFun         Function used in the 'proLik' function to
                        produce a profile likelihood for a variance
                        component
pcc                     REML convergence checks
pin                     Approximate standard errors for linear
                        functions of variance components
prepPed                 Prepares a pedigree by sorting and adding
                        'founders'
proLik                  Profile Likelihoods
prunePed                Prunes a pedigree based on individuals with
                        phenotypes
simGG                   Genetic group pedigree and data simulation
simPedDFC               Double first cousin pedigree construction
simPedHS                Half-sib pedigree construction
sm2list                 Converts a sparse matrix into a three column
                        format.
varTrans                Transforms ASReml-R gamma sampling variances to
                        component scale
warcolak                Pedigree and phenotypic values for a mythical
                        population of Warcolaks
