bam2counts              Compute the number of reads fall into specific
                        genomic region
bam2rpm                 Compute the normalized number of reads (rpm)
                        fall into specific genomic region
counts2lFC              Calculate log2FoldChange
df_final                an example of the result of doIntegration
doIntegration           Do integrative analysis
doMatch                 Match the RNA-Seq and ChIP-Seq data on the gene
                        level
doPareto                Prioritization of genes based on Z scores
promoter                an example of promoter region
res                     an example of the result of doMatch
test_chip_meta          meta data of preprocessed ChIP-Seq data
test_rna_meta           meta data of preprocessed RNA-Seq data
