# Simulation of Chromosomal Regions Shared by Family Members

## Documentation for package ‘ibdsim2’ version 1.2

- DESCRIPTION file.

## Help Pages

customMap | Custom recombination map
estimateCoeffs | Estimation of one- and two-locus relatedness coefficients
estimateIdentity | Estimation of one- and two-locus relatedness coefficients
estimateInbreeding | Estimation of one- and two-locus relatedness coefficients
estimateKappa | Estimation of one- and two-locus relatedness coefficients
estimateKinship | Estimation of one- and two-locus relatedness coefficients
estimateTwoLocusIdentity | Estimation of one- and two-locus relatedness coefficients
estimateTwoLocusInbreeding | Estimation of one- and two-locus relatedness coefficients
estimateTwoLocusKappa | Estimation of one- and two-locus relatedness coefficients
estimateTwoLocusKinship | Estimation of one- and two-locus relatedness coefficients
haploDraw | Draw haplotypes onto a pedigree plot
ibdsim | IBD simulation
ibdsim2 | ibdsim2: Simulation of chromosomal regions shared by family members
loadMap | Load a built-in genetic map
plotSegmentDistribution | Scatter plots of IBD segment distributions
profileSimIBD | Simulate markers on a given IBD pattern
realised | Realised relatedness
realisedIdentity | Realised relatedness
realisedInbreeding | Realised relatedness
realisedKappa | Realised relatedness
realisedKinship | Realised relatedness
uniformMap | Uniform recombination maps
zeroIBD | Probability of zero IBD