Package: foieGras
Title: Fit Continuous-Time State-Space and Latent Variable Models for
        Quality Control of Argos Satellite (and Other) Telemetry Data
        and for Estimating Movement Behaviour
Version: 0.6-9
Date: 2020-07-19
Authors@R: 
    c(
      person(given = "Ian",
           family = "Jonsen",
           role = c("aut", "cre", "cph"),
           email = "ian.jonsen@mq.edu.au"),
           person(given = "Toby",
           family = "Patterson",
           role = c("aut", "ctb"),
           email = "toby.patterson@cisro.au")
           )
Author: Ian Jonsen [aut, cre, cph],
  Toby Patterson [aut, ctb]
Maintainer: Ian Jonsen <ian.jonsen@mq.edu.au>
Description: Fits continuous-time random walk and correlated random walk state-space models for quality control animal tracking data ('Argos', processed light-level 'geolocation', 'GPS'). Template Model Builder ('TMB') is used for fast estimation. The 'Argos' data can be: (older) least squares-based locations; (newer) Kalman filter-based locations with error ellipse information; or a mixture of both. The models estimate two sets of location states corresponding to: 1) each observation, which are (usually) irregularly timed; and 2) user-specified time intervals (regular or irregular). Latent variable models are provided to estimate move persistence along tracks as an index of behaviour. 'Jonsen I', 'McMahon CR', 'Patterson TA', 'Auger-Méthé M', 'Harcourt R', 'Hindell MA', 'Bestley S' (2019) Movement responses to environment: fast inference of variation among southern elephant seals with a mixed effects model. Ecology 100:e02566 <doi:10.1002/ecy.2566>.
URL: <https://cran.r-project.org/package=foieGras>
BugReports: https://github.com/ianjonsen/foieGras/issues
License: MIT + file LICENSE
LazyData: true
Encoding: UTF-8
RoxygenNote: 7.1.1
LinkingTo: TMB (>= 1.7.15), RcppEigen
Imports: tibble (>= 2.1.3), ggplot2 (>= 3.0.0), lubridate, TMB (>=
        1.7.15), sf (>= 0.9-4), stringr, tidyr, future (>= 1.13.0),
        furrr (>= 0.1.0), rworldmap, parallel, purrr, dplyr (>= 1.0.0),
        trip, assertthat, wesanderson, patchwork
Suggests: testthat, covr, knitr, rmarkdown, rgeos
Depends: R (>= 3.5.0)
SystemRequirements: C++11, GDAL (>= 2.4.2), GEOS (>= 3.7.0), PROJ (>=
        5.2.0)
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2020-07-22 21:16:56 UTC; jonsen
Repository: CRAN
Date/Publication: 2020-07-22 21:50:02 UTC
Built: R 4.0.2; x86_64-w64-mingw32; 2020-08-02 16:00:53 UTC; windows
Archs: i386, x64
