# Generated by roxygen2: do not edit by hand

export(gi2gl)
export(gl.Ho)
export(gl.Hs)
export(gl.alf)
export(gl.amova)
export(gl.assign)
export(gl.basic.stats)
export(gl.collapse)
export(gl.collapse.pval)
export(gl.collapse.recursive)
export(gl.costdistances)
export(gl.define.pop)
export(gl.dist.heatmap)
export(gl.dist.pop)
export(gl.diversity)
export(gl.drop.ind)
export(gl.drop.loc)
export(gl.drop.pop)
export(gl.edit.recode.ind)
export(gl.edit.recode.pop)
export(gl.filter.callrate)
export(gl.filter.cloneid)
export(gl.filter.hamming)
export(gl.filter.hwe)
export(gl.filter.maf)
export(gl.filter.monomorphs)
export(gl.filter.repavg)
export(gl.filter.secondaries)
export(gl.fixed.diff)
export(gl.fst.pop)
export(gl.genleastcost)
export(gl.grm)
export(gl.grm.network)
export(gl.hwe.pop)
export(gl.ibd)
export(gl.keep.ind)
export(gl.keep.pop)
export(gl.make.recode.ind)
export(gl.make.recode.pop)
export(gl.map.interactive)
export(gl.merge.pop)
export(gl.nhybrids)
export(gl.outflank)
export(gl.pcoa)
export(gl.pcoa.plot)
export(gl.pcoa.plot.3d)
export(gl.pcoa.pop)
export(gl.pcoa.scree)
export(gl.percent.freq)
export(gl.plot)
export(gl.read.dart)
export(gl.read.dart.2row)
export(gl.read.silicodart)
export(gl.recalc.metrics)
export(gl.recode.ind)
export(gl.recode.pop)
export(gl.report.bases)
export(gl.report.callrate)
export(gl.report.hamming)
export(gl.report.heterozygosity)
export(gl.report.hwe)
export(gl.report.ld)
export(gl.report.maf)
export(gl.report.monomorphs)
export(gl.report.pa)
export(gl.report.pa.pop)
export(gl.report.repavg)
export(gl.report.secondaries)
export(gl.sexlinkage)
export(gl.sim.ind)
export(gl.sim.offspring)
export(gl.subsample.loci)
export(gl.tree.nj)
export(gl.utils.fdsim)
export(gl.write.csv)
export(gl2demerelate)
export(gl2fasta)
export(gl2faststructure)
export(gl2gds)
export(gl2gi)
export(gl2phylip)
export(gl2plink)
export(gl2sa)
export(gl2shp)
export(gl2snapp)
export(gl2structure)
export(gl2svdquartets)
export(gl2treemix)
export(is.fixed)
export(prob.hwe)
export(util.outflank)
export(util.outflank.MakeDiploidFSTMat)
export(util.outflank.plotter)
export(utils.hamming)
import(adegenet)
import(directlabels)
import(foreach)
import(ggplot2)
import(parallel)
import(plyr)
import(reshape2)
import(stringr)
import(tidyr)
import(utils)
importFrom(MASS,kde2d)
importFrom(MASS,write.matrix)
importFrom(PopGenReport,gd.kosman)
importFrom(PopGenReport,gd.smouse)
importFrom(PopGenReport,lgrMMRR)
importFrom(PopGenReport,wassermann)
importFrom(SNPRelate,snpgdsClose)
importFrom(SNPRelate,snpgdsCreateGeno)
importFrom(SNPRelate,snpgdsOpen)
importFrom(SNPRelate,snpgdsSummary)
importFrom(StAMPP,stamppFst)
importFrom(StAMPP,stamppNeisD)
importFrom(ape,nj)
importFrom(ape,pcoa)
importFrom(ape,plot.phylo)
importFrom(ape,root)
importFrom(data.table,rbindlist)
importFrom(data.table,setnames)
importFrom(dismo,Mercator)
importFrom(doParallel,registerDoParallel)
importFrom(gdistance,commuteDistance)
importFrom(gdistance,costDistance)
importFrom(gdistance,geoCorrection)
importFrom(gdistance,rSPDistance)
importFrom(gdistance,shortestPath)
importFrom(gdistance,transition)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,heat.colors)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,arrows)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,box)
importFrom(graphics,hist)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(hierfstat,basic.stats)
importFrom(hierfstat,genind2hierfstat)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,delete_edges)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,layout_with_drl)
importFrom(igraph,layout_with_fr)
importFrom(igraph,layout_with_kk)
importFrom(leaflet,addCircleMarkers)
importFrom(leaflet,addProviderTiles)
importFrom(leaflet,addTiles)
importFrom(leaflet,leaflet)
importFrom(methods,new)
importFrom(mmod,pairwise_D)
importFrom(mmod,pairwise_Gst_Hedrick)
importFrom(mmod,pairwise_Gst_Nei)
importFrom(pca3d,pca3d)
importFrom(plyr,ddply)
importFrom(qvalue,qvalue)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(rgdal,writeOGR)
importFrom(rrBLUP,A.mat)
importFrom(seqinr,write.fasta)
importFrom(sp,"coordinates<-")
importFrom(sp,"proj4string<-")
importFrom(sp,CRS)
importFrom(sp,Line)
importFrom(sp,Lines)
importFrom(sp,SpatialLines)
importFrom(sp,SpatialLinesLengths)
importFrom(sp,SpatialPointsDataFrame)
importFrom(stats,as.dist)
importFrom(stats,complete.cases)
importFrom(stats,cov)
importFrom(stats,dist)
importFrom(stats,dnorm)
importFrom(stats,heatmap)
importFrom(stats,lm)
importFrom(stats,nobs)
importFrom(stats,optim)
importFrom(stats,optimize)
importFrom(stats,pchisq)
importFrom(stats,pgamma)
importFrom(stats,pnorm)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,rbinom)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,step)
importFrom(stats,var)
importFrom(stats,variable.names)
importFrom(stringr,str_pad)
importFrom(utils,combn)
importFrom(utils,edit)
importFrom(utils,flush.console)
importFrom(utils,getTxtProgressBar)
importFrom(utils,read.csv)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,write.csv)
importFrom(utils,write.table)
importFrom(vegan,mantel)
importFrom(vegan,vegdist)
