bs4_nc                  gates out or assign indicators to Synechococcus
                        cyanobacteria cells in the bottom right of the
                        2-D space.
bs5_nc                  gates out or assign indicators to Synechococcus
                        cyanobacteria cells in the top right of the 2-D
                        space.
celldebris_emclustering
                        identifies Synechococcus cyanobacteria cells
                        and Debris in a flowfile using an EM style
                        algorithm.
celldebris_nc           gates out or assign indicators to Synechococcus
                        cyanobacteria cells.
cellmargin              Removes or assign indicators to margin events.
cluster_plot            plots the expression matrix of a flowframe
                        analysed with celldebris_emclustering.
cyanoFilter             cyanoFilter: A package to identify and/or
                        assign indicators to BS4, BS5 cyanobacteria
                        cells contained in water sample.
debris_inc              gates out or assign indicators to debris
                        particle.
debris_nc               gates out or assign indicators to debris
                        particle.
goodfcs                 indicates if measurement from a flowfile is
                        good or bad.
lnTrans                 log transforms the expression matrix of a
                        flowframe
mvnorm                  multivariate normal density
nona                    Removes NA values from the expression matrix of
                        a flow cytometer file.
noneg                   Removes negative values from the expression
                        matrix
pair_plot               plots the expression matrix of a flowframe.
                        Note that, it takes some time to display the
                        plot.
retain                  Decides if a file should be retiained or
                        removed based on its status.
