Design file parser      Design file parser
GEDI                    Gene Expression and Dosage Integrator
Probe file parser       Probe file parser
STEPS                   Selective Trends Evidenced by Penetrance Surge
WACA                    Waves aCGH Correction Algorithm
bias                    WACA bias computation for a probe series
cghRA.array             cghRA.array class constructor
cghRA.array-class       Class '"cghRA.array"'
cghRA.copies            cghRA.copies class constructor
cghRA.copies-class      Class '"cghRA.copies"'
cghRA.design            cghRA.design class constructor
cghRA.design-class      Class '"cghRA.design"'
cghRA.probes            cghRA.probes class constructor
cghRA.probes-class      Class '"cghRA.probes"'
cghRA.regions           cghRA.regions class constructor
cghRA.regions-class     Class '"cghRA.regions"'
cghRA.series            cghRA.series class constructor
cghRA.series-class      Class '"cghRA.series"'
cnvScore                Polymorphism likelihood score for a genomic
                        segment
copies                  LogRatio to copies conversion
drawableFromClass.cghRA.probes
                        Extend Rgb compatibility to cghRA.probes
fillGaps                Fill gaps between consecutive segments
localize                Localize CGH probes in a genome
map2design              Update a track coordinates to match a distinct
                        CGH design
model.apply             Computes copy number for a set of CGH segments
model.auto              Automatic generation of copy number model
model.test              Copy number model quality assessment
parallelize             Reshapes a list of segments
parseKaryo              Parses a karyotype-like formula
penetrance              Penetrance computation from a series of
                        segments
process                 cghRA array processing
segmentMap-class        Class '"segmentMap"'
tk.annotate             Interactive cghRA track annotation
tk.cghRA                cghRA Tcl-Tk launcher
tk.design               Interactive cghRA design processing
tk.modelize             Interactive copy number modelization
tk.series               Interactive cghRA series processing
tk.value                Tk interface utilities
trace2track             Converts cnvScore traces to a drawable track
track.CNV.DGVsupp       DGV supporting variant parser
xRA                     Short/Long Recurrent Abnormalities detection
