Package: bPeaks
Type: Package
Title: bPeaks: an intuitive peak-calling strategy to detect
        transcription factor binding sites from ChIP-seq data in small
        eukaryotic genomes
Version: 1.2
Date: 2014-02-28
Author: Jawad MERHEJ and Gaelle LELANDAIS
Maintainer: Gaelle LELANDAIS <gaelle.lelandais@univ-paris-diderot.fr>
Description: bPeaks is a simple approach to identify transcription factor binding sites from ChIP-seq data. Our general philosophy is to provide an easy-to-use tool, well-adapted for small eukaryotic genomes (< 20 Mb). bPeaks uses a combination of 4 cutoffs (T1, T2, T3 and T4) to mimic "good peak" properties as described by biologists who visually inspect the ChIP-seq data on a genome browser. For yeast genomes, bPeaks calculates the proportion of peaks that fall in promoter sequences. These peaks are good candidates as transcription factor binding sites. 
License: GPL
Packaged: 2014-02-28 15:55:50 UTC; lelandais
Depends: R (>= 2.10)
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-02-28 17:55:13
Built: R 4.0.0; ; 2020-04-26 14:41:03 UTC; windows
