BFD_Processor           BFD_Processor, a Bi-Flux-Del-Processor function
BYPASS_REACTIONS_SUBSTRATE
                        BYPASS_REACTIONS_SUBSTRATE, to find the influx
                        and efflux reactions available to a particular
                        metabolite/substrate
CHANGE_OBJ_FUNCTION     CHANGE_OBJ_FUNCTION, a function to change the
                        objective for optimization
CHANGE_RXN_BOUNDS       CHANGE_RXN_BOUNDS, Change Reaction Bounds
DEGREE_MEASURE          DEGREE_MEASURE, measures the in-degree and
                        out-degree of the metabolites in the network.
Ec_iAF1260_flux1        E.coli model 1260 ORF's
Ec_iAF1260_flux2        E.coli model 1260 ORF's
Ec_iJR904               E.coli model 904 ORF's
Ecoli_core              E.coli core model 72 reactions and 95
                        metabolites
Exhaustive_double_deletion
                        Exhaustive_double_deletion, a function for
                        computing synthetic double knockouts.
Exhaustive_single_deletion
                        Exhaustive_single_deletion, a function that
                        deletes each reaction in the network one at a
                        time and returns results describing reaction
                        lethality
FBA_solve               FBA_solve, a function to solve CBM problems
FLUX_VAR_ANALYSIS       FLUX_VAR_ANALYSIS, a function to perform a flux
                        variability analysis.
FVA_robustness          FVA_robustness, a function to determine the
                        change in robustness of the network caused by a
                        mutation.
Flux_Ranger             Flux_Ranger - a function to create a flux ramp.
Gene_del                Gene_del, a function to create Gene Deletion
                        mutants
H_pylori_iIT341         Helicobacter pylori by Ines Thiele
H_sapien_Recon1         H. sapien Recon1, human metabolic network
                        reconstruction
M_barkeri_iAF629        Genome scale metabolic model for the archaeal
                        methanogen M. Barkeri
M_tb_iNJ661             M. tuberculosis model iNJ661
PERTURBATION_analysis   PERTURBATION_analysis, a function for
                        robustness analysis.
PHPP                    PHPP, phenotypic phase plane analysis
SEARCH_metabolite       SEARCH_metabolite, a function to search for
                        metabolites in a model using a simple text
                        query
SEARCH_reaction         SEARCH_reaction, a function to search for
                        reactions in a model using a simple text query
SINGLE_DEL_FLUXOME      SINGLE_DEL_FLUXOME, a function to generate
                        comparative fluxome graphs
S_aureus_iSB619         Staphylococcus aureus model iSB619 by S.Becker
S_cerevisiae_IND750     Saccharomyces Cerevisiae iND750
Sybil_2_FBA_obj         Sybil_2_FBA_obj, a function to convert a model
                        generated by Sybil into the one used by
                        abcdeFBA.
View_objective          View_objective, a function that shows the
                        components of the objective function.
flux_difference_plotter
                        flux_difference_plotter, a function to plot two
                        pre-existing flux distributions obtained using
                        FBA_solve
