AllSPR	AllSPR
AllTBR	TBR
AsBinary	AsBinary
CharacterLength	CharacterLength
congreveLamsdellMatrices	congreveLamsdellMatrices
C_MorphyLength	MorphyTreeLength
DoubleNNI	DoubleNNI
EdgeListSearch	TreeSearch
Evaluate	Evaluate
FastCharacterLength	CharacterLength
Fitch	Fitch
FitchSteps	CharacterLength
GetMorphyLength	MorphyTreeLength
ICPerStep	ICPerStep
ICS	ICPerStep
ICSteps	ICSteps
inapplicable.citations	inapplicable.citations
inapplicable.datasets	inapplicable.datasets
inapplicable.phyData	inapplicable.phyData
InfoAmounts	InfoAmounts
IWBootstrap	MorphyBootstrap
IWDestroyMorphy	IWScore
IWInitMorphy	IWScore
IWMultiRatchet	Ratchet
IWRatchet	Ratchet
IWRatchetConsensus	Ratchet
IWScore	IWScore
IWScoreMorphy	ProfileScore
IWTreeSearch	TreeSearch
Jackknife	Ratchet
JackLabels	JackLabels
LogisticPoints	LogisticPoints
MinimumLength	MinimumLength
MinimumSteps	MinimumLength
MorphyBootstrap	MorphyBootstrap
MorphyErrorCheck	MorphyErrorCheck
MorphyLength	MorphyTreeLength
MorphyTreeLength	MorphyTreeLength
MorphyWeights	MorphyWeights
mpl_apply_tipdata	mpl_apply_tipdata
mpl_attach_rawdata	mpl_attach_rawdata
mpl_attach_symbols	mpl_attach_symbols
mpl_delete_Morphy	mpl_delete_Morphy
mpl_delete_rawdata	mpl_delete_rawdata
mpl_first_down_recon	mpl_first_down_recon
mpl_first_up_recon	mpl_first_up_recon
mpl_get_charac_weight	mpl_get_charac_weight
mpl_get_numtaxa	mpl_get_numtaxa
mpl_get_num_charac	mpl_get_num_charac
mpl_get_num_internal_nodes	mpl_get_num_internal_nodes
mpl_get_symbols	mpl_get_symbols
mpl_init_Morphy	mpl_init_Morphy
mpl_new_Morphy	mpl_new_Morphy
mpl_second_down_recon	mpl_second_down_recon
mpl_second_up_recon	mpl_second_up_recon
mpl_set_charac_weight	mpl_set_charac_weight
mpl_set_num_internal_nodes	mpl_set_num_internal_nodes
mpl_set_parsim_t	mpl_set_parsim_t
mpl_translate_error	mpl_translate_error
mpl_update_lower_root	mpl_update_lower_root
mpl_update_tip	mpl_update_tip
MultiRatchet	Ratchet
NNI	NNI
NNISwap	NNI
PhyDat2Morphy	PhyDat2Morphy
PrepareDataIW	PrepareDataProfile
PrepareDataProfile	PrepareDataProfile
ProfileBootstrap	MorphyBootstrap
ProfileDestroyMorphy	ProfileScore
ProfileInitMorphy	ProfileScore
ProfileRatchet	Ratchet
ProfileScore	ProfileScore
ProfileScoreMorphy	ProfileScore
ProfileTreeSearch	TreeSearch
RandomMorphyTree	RandomMorphyTree
RandomTreeScore	RandomTreeScore
Ratchet	Ratchet
RatchetConsensus	Ratchet
RearrangeEdges	RearrangeEdges
referenceTree	referenceTree
RootedNNI	NNI
RootedNNISwap	NNI
RootedSPR	SPR
RootedSPRSwap	SPR
RootedTBR	TBR
RootedTBRSwap	TBR
SetMorphyWeights	SetMorphyWeights
SingleCharMorphy	SingleCharMorphy
SPR	SPR
SPRSwap	SPR
SPRWarning	TBRWarning
StopUnlessBifurcating	StopUnlessBifurcating
Suboptimality	Suboptimality
SuccessiveApproximations	SuccessiveApproximations
SuccessiveWeights	SuccessiveWeights
summary.morphyPtr	summary.morphyPtr
TBR	TBR
TBRMoves	TBR
TBRSwap	TBR
TBRWarning	TBRWarning
TipsAreColumns	TipsAreNames
TipsAreNames	TipsAreNames
TreeSearch	TreeSearch
UniqueExceptHits	UniqueExceptHits
UnloadMorphy	UnloadMorphy
WithOneExtraStep	WithOneExtraStep
