AllSPR                  All SPR trees
AsBinary                Convert a number to binary
CharacterLength         Character length
Evaluate                Evaluate tree
Fitch                   Calculate parsimony score with inapplicable
                        data
ICSteps                 Information Content Steps
IWScore                 Implied weights parsimony Score
IWScoreMorphy           Profile Parsimony Score
InfoAmounts             Amount of information in each character
JackLabels              Label nodes with jackknife support values
Jackknife               Parsimony Ratchet
LogisticPoints          Logistic Points Extract points from a fitted
                        model
MinimumLength           Minimum length
MorphyBootstrap         Ratchet bootstrapper
MorphyWeights           Report the character weightings associated with
                        a Morphy object
NNI                     Nearest Neighbour Interchange (NNI)
PhyDat2Morphy           Initialize a Morphy Object from a 'phyDat'
                        object
PrepareDataProfile      Prepare data for Profile Parsimony
RandomMorphyTree        Random postorder tree
RandomTreeScore         Parsimony score of random postorder tree
RearrangeEdges          Rearrange edges of a phylogenetic tree
SPR                     Subtree Pruning and Rearrangement (SPR)
SetMorphyWeights        Set the character weightings associated with a
                        Morphy object
SingleCharMorphy        Morphy object from single character
SuccessiveApproximations
                        Tree Search using Successive Approximations
TBR                     Tree bisection and reconnection (TBR)
UnloadMorphy            Destroy a Morphy Object
WithOneExtraStep        Number of trees with one extra step
congreveLamsdellMatrices
                        100 simulated data matrices
inapplicable.citations
                        Thirty Datasets with Inapplicable data
inapplicable.datasets   Thirty Datasets with Inapplicable data
inapplicable.phyData    Thirty Datasets with Inapplicable data
referenceTree           Tree topology for matrix simulation
summary.morphyPtr       Details the attributes of a morphy object
