Package: TransPhylo
Version: 1.4.4
Date: 2020-06-01
Title: Inference of Transmission Tree from a Dated Phylogeny
Authors@R: c(person("Xavier","Didelot",
                  email="xavier.didelot@gmail.com",
                  comment = c(ORCID = "0000-0003-1885-500X"),
                  role=c("aut", "cre")),
             person("Yuanwei", "Xu",
	           email = "y.xu@bham.ac.uk",
		         role = c("ctb")))
Maintainer: Xavier Didelot <xavier.didelot@gmail.com>
Description: Inference of transmission tree from a dated phylogeny. 
    Includes methods to simulate and analyse outbreaks.
    The methodology is described in
    Didelot et al. (2014) <doi:10.1093/molbev/msu121>,
    Didelot et al. (2017) <doi:10.1093/molbev/msw275>.
License: GPL (>= 2)
Depends: R (>= 3.0.0)
Imports: Rcpp (>= 0.12.8), stats, graphics, ape
Suggests: knitr, testthat, purrr, coda, grDevices, lattice
LinkingTo: Rcpp
Encoding: UTF-8
RoxygenNote: 6.1.1
SystemRequirements: C++11
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2020-06-04 10:49:19 UTC; Xavier
Author: Xavier Didelot [aut, cre] (<https://orcid.org/0000-0003-1885-500X>),
  Yuanwei Xu [ctb]
Repository: CRAN
Date/Publication: 2020-06-08 21:40:14 UTC
Built: R 4.0.2; x86_64-w64-mingw32; 2020-08-02 08:41:46 UTC; windows
Archs: i386, x64
