# Spatial Convex Clustering

## Documentation for package ‘SpaCCr’ version 0.1.0

- DESCRIPTION file.

## Help Pages

CNVPlotSeriesMeans | Plot subjects' copy number data with cluster means overlayed for a single chromosome
GetClusters | Compute Clusters from fusions
GetGammaCV | Get optimal cross validated gamma values by various rules
GetParBlocks | Function to compute blocks for parallization; should not be called directly
hello | Hello, World!
methy | A subset of methylation data for 50 subjects
MethyRegionPlot | Plots methylation data by Genomic Coordinates for a given chromosomal region with cluster means overlayed for each subject.
PlotCV | A function for plotting cross validation errors
SpaCC | Base function for computing SpaCC solution for single regularization value.
SpaCC_CV | Perform Cross Validation to select gamma/sparsity level
SpaCC_Methy | Performs Spatial Convex Clustering for methylation data
SpaCC_Missing | Solve Spatial Convex Clustering problem for missing data
SpaCC_Path | Solve Spatial Convex Clustering problem for path of regularization parameters
SpaCC_Path_Parallel | Solve Spatial Convex Clustering problem for path of regularization parameters in parallel
ThreshV | Threshold differences