Package: SSDM
Type: Package
Title: Stacked Species Distribution Modelling
Version: 0.2.8
Author: Sylvain Schmitt, Robin Pouteau, Dimitri Justeau, Florian de Boissieu, Lukas Baumbach, Philippe Birnbaum
Maintainer: Sylvain Schmitt <sylvain.m.schmitt@gmail.com>
URL: https://github.com/sylvainschmitt/SSDM
BugReports: https://github.com/sylvainschmitt/SSDM/issues
Description: Allows to map species richness and endemism based on stacked
    species distribution models (SSDM). Individuals SDMs can be created using a
    single or multiple algorithms (ensemble SDMs). For each species, an SDM can
    yield a habitat suitability map, a binary map, a between-algorithm variance
    map, and can assess variable importance, algorithm accuracy, and between-
    algorithm correlation. Methods to stack individual SDMs include summing
    individual probabilities and thresholding then summing. Thresholding can be
    based on a specific evaluation metric or by drawing repeatedly from a Bernoulli
    distribution. The SSDM package also provides a user-friendly interface.
License: GPL (>= 3) | file LICENSE
LazyData: TRUE
Imports: sp (>= 1.2.0), raster (>= 2.9-5), methods (>= 3.2.2), mgcv (>=
        1.8.7), earth (>= 4.4.3), rpart (>= 4.1.10), gbm (>= 2.1.1),
        randomForest (>= 4.6.10), dismo (>= 1.0.12), nnet (>= 7.3.10),
        e1071 (>= 1.6.7), ggplot2 (>= 3.1.1), reshape2 (>= 1.4.3),
        scales (>= 1.0.0), shiny (>= 0.12.2), shinydashboard (>=
        0.5.1), shinyFiles (>= 0.7.0), spThin (>= 0.1.0), poibin (>=
        1.3.0)
Depends: R (>= 3.2.2)
Collate: 'SDM.R' 'Algorithm.SDM.R' 'Ensemble.SDM.R' 'Env.R'
        'Occurrences.R' 'PA.select.R' 'SSDM.R' 'Stacked.SDM.R'
        'accuracy.R' 'checkargs.R' 'data.values.R' 'ensemble.R'
        'modelling.R' 'ensemble_modelling.R' 'optim.thresh.R'
        'evaluate.R' 'evaluate.axes.R' 'get_PA.R' 'get_model.R' 'gui.R'
        'load_model.R' 'load_occ.R' 'load_var.R' 'mapDiversity.R'
        'plot.model.R' 'project.R' 'save.model.R' 'stack_modelling.R'
        'stacking.R' 'update.stack.R' 'zzz.R'
Suggests: testthat, knitr, rmarkdown, rgdal
RoxygenNote: 6.1.1
VignetteBuilder: knitr, rmarkdown
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2020-02-28 12:13:55 UTC; sylvain
Repository: CRAN
Date/Publication: 2020-02-28 13:00:02 UTC
Built: R 4.0.2; ; 2020-08-02 14:56:22 UTC; windows
