# Single-Cell RNA-Seq Gene Expression Recovery

## Documentation for package ‘SAVER’ version 1.1.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

SAVER-package | SAVER: Single-cell Analysis Via Expression Recovery
calc.a | Optimizes variance
calc.b | Optimizes variance
calc.estimate | Calculate estimate
calc.estimate.mean | Calculate estimate
calc.estimate.null | Calculate estimate
calc.k | Optimizes variance
calc.loglik.a | Calculates marginal likelihood
calc.loglik.b | Calculates marginal likelihood
calc.loglik.k | Calculates marginal likelihood
calc.maxcor | Calculate maximum correlation
calc.post | Calculates SAVER posterior
combine.saver | Combines SAVER
cor.cells | Calculates gene-to-gene and cell-to-cell SAVER correlation
cor.genes | Calculates gene-to-gene and cell-to-cell SAVER correlation
expr.predict | Calculates SAVER prediction.
get.mu | Output prior predictions
linnarsson | Mouse brain single-cell RNA-seq dataset
linnarsson_saver | SAVER recovered mouse brain single-cell RNA-seq dataset
sample.saver | Samples from SAVER
saver | Runs SAVER
saver.fit | Fits SAVER
saver.fit.mean | Fits SAVER
saver.fit.null | Fits SAVER