# Analytical Tools for Radiation Oncology

## Documentation for package ‘RadOnc’ version 1.1.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.
- Package NEWS.

## Help Pages

A C D G I J L M N P Q R S T V W Z misc

RadOnc-package | Analytical Tools for Radiation Oncology

## -- A --

as.list-method | Class '"DVH.list"'
as.list-method | Class '"structure.list"'

## -- C --

c-method | Class '"DVH"'
c-method | Class '"DVH.list"'
c-method | Class '"structure.list"'
c-method | Class '"structure3D"'
c-method | Class '"zDVH"'
calculate.DVH | Calculate DVH data for one or more structure(s) using a dose grid
calculate.DVH-method | Calculate DVH data for one or more structure(s) using a dose grid
calculate.DVH-methods | Calculate DVH data for one or more structure(s) using a dose grid
compareStructures | Compare Axially-Defined Three-Dimensional Structures
compareStructures.axial | Compare Axially-Defined Three-Dimensional Structures
compareStructures.EMD | Compare Axially-Defined Three-Dimensional Structures
compareStructures.grid | Compare Axially-Defined Three-Dimensional Structures
compareStructures.hausdorff | Compare Axially-Defined Three-Dimensional Structures
compareStructures.surface | Compare Axially-Defined Three-Dimensional Structures
cord | DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'

## -- D --

dim-method | Class '"structure3D"'
DVH | Class '"DVH"'
DVH-class | Class '"DVH"'
DVH.list | Class '"DVH.list"'
DVH.list-class | Class '"DVH.list"'

## -- G --

get.HU | Extract Hounsfield Unit (HU) data for one or more structure(s) from a CT image
get.HU-method | Extract Hounsfield Unit (HU) data for one or more structure(s) from a CT image
get.HU-methods | Extract Hounsfield Unit (HU) data for one or more structure(s) from a CT image
gEUD | Generalized Equivalent Uniform Dose (gEUD) Calculation
gEUD-method | Generalized Equivalent Uniform Dose (gEUD) Calculation
gEUD-methods | Generalized Equivalent Uniform Dose (gEUD) Calculation

## -- I --

initialize-method | Class '"DVH"'
initialize-method | Class '"DVH.list"'
initialize-method | Class '"structure.list"'
initialize-method | Class '"zDVH"'

## -- J --

janedoe | DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
janedoe.RTdata | DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
johndoe | DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'

## -- L --

lapply-method | Class '"DVH.list"'
lapply-method | Class '"structure.list"'
length-method | Class '"DVH.list"'
length-method | Class '"structure.list"'
lines-method | Class '"DVH"'
LQE | Linear Quadratic Extrapolated (LQE) Dose Conversion
LQE-method | Linear Quadratic Extrapolated (LQE) Dose Conversion
LQE-methods | Linear Quadratic Extrapolated (LQE) Dose Conversion

## -- M --

mad-method | Class '"DVH.list"'
mandible | DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
max-method | Class '"DVH"'
max-method | Class '"DVH.list"'
max-method | Class '"zDVH"'
mean-method | Class '"DVH"'
mean-method | Class '"DVH.list"'
mean-method | Class '"zDVH"'
median-method | Class '"DVH.list"'
min-method | Class '"DVH"'
min-method | Class '"DVH.list"'
min-method | Class '"zDVH"'

## -- N --

names-method | Class '"DVH"'
names-method | Class '"DVH.list"'
names-method | Class '"RTdata"'
names-method | Class '"structure.list"'
names-method | Class '"structure3D"'
names-method | Class '"zDVH"'
names<--method | Class '"DVH"'
names<--method | Class '"DVH.list"'
names<--method | Class '"RTdata"'
names<--method | Class '"structure.list"'
names<--method | Class '"structure3D"'
names<--method | Class '"zDVH"'

## -- P --

plot-method | Class '"DVH"'
plot-method | Class '"DVH.list"'
plot-method | Additional Methods for Function 'plot' in Package 'graphics'
plot-method | Class '"structure.list"'
plot-method | Class '"structure3D"'
plot-method | Class '"zDVH"'
plot-methods | Additional Methods for Function 'plot' in Package 'graphics'
plot.DVH | Additional Methods for Function 'plot' in Package 'graphics'
plot.DVH.list | Additional Methods for Function 'plot' in Package 'graphics'
plot.zDVH | Additional Methods for Function 'plot' in Package 'graphics'
points-method | Class '"DVH"'
print-method | Class '"DVH"'
print-method | Class '"DVH.list"'
print-method | Class '"RTdata"'
print-method | Class '"structure.list"'
print-method | Class '"structure3D"'
print-method | Class '"zDVH"'

## -- Q --

quantile-method | Class '"DVH.list"'

## -- R --

RadOnc | Analytical Tools for Radiation Oncology
RadOnc-data | DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
range-method | Class '"DVH"'
range-method | Class '"DVH.list"'
range-method | Class '"structure.list"'
range-method | Class '"structure3D"'
read.DICOM.RT | Read DICOM-RT data from an input directory
read.DVH | Read DVH data from input file
rev-method | Class '"DVH.list"'
rev-method | Class '"structure.list"'
RTdata-class | Class '"RTdata"'

## -- S --

sd-method | Class '"DVH.list"'
show-method | Class '"DVH"'
show-method | Class '"DVH.list"'
show-method | Class '"RTdata"'
show-method | Class '"structure.list"'
show-method | Class '"structure3D"'
show-method | Class '"zDVH"'
stomach | DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
structure.list-class | Class '"structure.list"'
structure3D-class | Class '"structure3D"'
subset-method | Extract a subset of a larger DVH list
subset-methods | Extract a subset of a larger DVH list
subset.DVH.list | Extract a subset of a larger DVH list
sum-method | Class '"DVH"'
sum-method | Class '"DVH.list"'

## -- T --

t.test-method | Class '"DVH.list"'
teeth | DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'

## -- V --

var-method | Class '"DVH.list"'

## -- W --

wilcox.test-method | Class '"DVH.list"'

## -- Z --

zDVH | Class '"zDVH"'
zDVH-class | Class '"zDVH"'

## -- misc --

$-method | Class '"DVH"'
$-method | Class '"DVH.list"'
$-method | Class '"RTdata"'
$-method | Class '"structure.list"'
$-method | Class '"structure3D"'
$-method | Class '"zDVH"'
$<--method | Class '"DVH"'
$<--method | Class '"RTdata"'
$<--method | Class '"structure3D"'
$<--method | Class '"zDVH"'
[-method | Class '"DVH"'
[-method | Class '"DVH.list"'
[-method | Class '"structure.list"'
[-method | Class '"zDVH"'
[[-method | Class '"DVH.list"'
[[-method | Class '"structure.list"'
[[<--method | Class '"DVH.list"'
[[<--method | Class '"structure.list"'