Approximator            Quantify Quartet Resolution Probabilities Using
                        2012 Formulation
Plot.Another.TreeSI     A function to visualize QIRP of additional data
                        across a tree topology
PlotTreeSI              A funtion to visualize QIRP across a tree
                        topology
allmodel.signal.noise   A function to compute results of QIRP, QIHP,
                        and QIPP accomodating uneven branch lengths and
                        user defined substitution models or base
                        frequency distributions
cluster.signal.noise    Quantify Quartet Resolution Probabilities Using
                        2012 Formulation and MCMC approach
defined.multi.profile   A function to plot phylogenetic informativeness
                        profiles based on site rate cutoffs by
                        partition
informativeness.profile
                        A function to plot phylogenetic informativeness
                        profiles
multi.profile           A function to plot phylogenetic informativeness
                        profiles based on site rate cutoffs by rate
parallel.cluster.signal.noise
                        Quantify Quartet Resolution Probabilities Using
                        2012 Formulation and MCMC approach in parallel
plotPosterior           A function to visualize outputs of QIRP, QIHP,
                        and QIPP computed across a distribution of
                        trees
prumetalrates           Rates for prumetal dataset
rag1                    Rates rag1 dataset
sample.rates            Simulated rates
sample.tree             Sample tree
sample.tree2            Another Sample tree
space.maker             Core Function required to assemble heatmaps of
                        QIRP as in Prum et al. 2015
space.maker.narrow      Core Function required to assemble more
                        fine-scale heatmaps of QIRP as in Prum et al.
                        2015
su.bayes                A function to compute results of QIRP, QIHP,
                        and QIPP across a posterior distribution of
                        trees
