Package: MSCquartets
Title: Analyzing Gene Tree Quartets under the Multi-Species Coalescent
Version: 1.0.5
Authors@R: c(person("Elizabeth", "Allman", email ="e.allman@alaska.edu", role = "aut"),
             person("Hector", "Banos", email = "hbanos@gatech.edu", role = "aut"),
             person("Jonathan", "Mitchell", email = "jonathanmitchell88@gmail.com", role = "aut"),
             person("John", "Rhodes", email = "j.rhodes@alaska.edu", role = c("aut", "cre")) )
Description: Methods for analyzing and using quartets displayed on a collection of gene trees, 
      primarily to make inferences about the species tree or network under the multi-species 
      coalescent model. These include quartet hypothesis tests for the model, as developed by 
      Mitchell et al. (2019) <doi:10.1214/19-EJS1576>, the species tree inference routines 
      based on quartet distances of Rhodes (2019) <doi:10.1109/TCBB.2019.2917204> and 
      Yourdkhani and Rhodes (2019), and the NANUQ algorithm for inference of level-1 
      species networks of Allman et al. (2019) <arXiv:1905.07050>.
License: MIT + file LICENSE
Imports: RandomFieldsUtils, zipfR, graphics, stats, Rdpack
RdMacros: Rdpack
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-12-15 19:21:29 UTC; johnrhodes
Author: Elizabeth Allman [aut],
  Hector Banos [aut],
  Jonathan Mitchell [aut],
  John Rhodes [aut, cre]
Maintainer: John Rhodes <j.rhodes@alaska.edu>
Depends: R (>= 3.2.0), ape (>= 5.0), phangorn
Repository: CRAN
Date/Publication: 2019-12-16 11:50:13 UTC
Built: R 4.0.2; ; 2020-08-02 13:05:57 UTC; windows
