Package: ICAMS
Type: Package
Title: In-depth Characterization and Analysis of Mutational Signatures
        ('ICAMS')
Version: 2.1.2
Author: Steve Rozen, Nanhai Jiang, Arnoud Boot, Mo Liu
Maintainer: Steve Rozen <steverozen@gmail.com>
Description: Analysis and visualization of experimentally elucidated mutational
    signatures -- the kind of analysis and visualization in Boot et al.,
    "In-depth characterization of the cisplatin mutational signature in 
    human cell lines and in esophageal and liver tumors", Genome Research 2018, 
    <doi:10.1101/gr.230219.117>. 'ICAMS' stands for In-depth Characterization 
    and Analysis of Mutational Signatures. 'ICAMS' has functions to read in 
    variant call files (VCFs) and to collate the corresponding catalogs of 
    mutational spectra and to analyze and plot catalogs of mutational spectra
    and signatures. Handles both "counts-based" and "density-based" catalogs
    of mutational spectra or signatures.
License: GPL-3
URL: https://github.com/steverozen/ICAMS
BugReports: https://github.com/steverozen/ICAMS/issues
Encoding: UTF-8
LazyData: true
Language: en-US
biocViews:
Imports: Biostrings, BSgenome, data.table, dplyr, GenomeInfoDb,
        GenomicRanges, graphics, grDevices, IRanges, RColorBrewer,
        stats, stringi, utils, zip
Depends: R (>= 3.5),
RoxygenNote: 7.1.0
Suggests: testthat, BSgenome.Hsapiens.1000genomes.hs37d5,
        BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10
NeedsCompilation: no
Packaged: 2020-04-21 09:21:56 UTC; steve
Repository: CRAN
Date/Publication: 2020-04-21 12:20:24 UTC
Built: R 4.0.2; ; 2020-08-02 06:02:30 UTC; windows
