Package: HeritSeq
Title: Heritability of Gene Expression for Next-Generation Sequencing
Version: 1.0.1
Date: 2019-02-11
Author: W. Jenny Shi [aut, cre],
    Pamela Russell [aut],
    Pratyaydipta Rudra [aut, cre],
    Brian Vestal [aut, cre],
    Katerina Kechris [aut],
    Laura Saba [aut]
Maintainer: W. Jenny Shi <wjennyshi@gmail.com>
Description: Statistical framework to analyze heritability of gene expression 
    based on next-generation sequencing data and simulating sequencing reads. 
    Variance partition coefficients (VPC) are computed using linear mixed effects 
    and generalized linear mixed effects models. Compound Poisson and negative 
    binomial models are included. Reference: Rudra, Pratyaydipta, et al. "Model based heritability scores for high-throughput sequencing data." BMC bioinformatics 18.1 (2017): 143.
BugReports: https://github.com/KechrisLab/HeritSeq/issues
Depends: R (>= 3.2.3)
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports: cplm, DESeq2, lme4, pbapply, tweedie, MASS,
        SummarizedExperiment
Suggests: glmmADMB
Additional_repositories: http://glmmadmb.r-forge.r-project.org/repos
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2019-02-11 16:59:28 UTC; wenjennyshi
Repository: CRAN
Date/Publication: 2019-02-11 21:13:29 UTC
Built: R 4.0.2; ; 2020-08-02 16:55:49 UTC; windows
