# Quantification of Fate Bias in Multipotent Progenitors

## Documentation for package ‘FateID’ version 0.1.9

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

compdr | Computation of dimensional reduction representations
diffexpnb | Function for differential expression analysis
dptTraj | Inferenence of diffusion pseudotime (DPT) for all cells on a differentiation trajectory
fateBias | Computation of fate bias
filterset | Function filtering expression data
gene2gene | Comparative plot of the expression levels of two genes
getFeat | Feature selection based on differentially expressed genes
getPart | Inference of a cell type partition
getsom | Topological ordering of pseudo-temporal expression profiles
impGenes | Extract genes with high importance values for random forest classification
intestine | Single-cell transcriptome data of intestinal epithelial cells
plotdiffgenesnb | Function for plotting differentially expressed genes
plotexpression | Plotting of pseudo-temporal expression profiles
plotexpressionProfile | Plotting smoothed pseudo-temporal expression profiles for groups of genes
plotFateMap | Plot dimensional reduction representation of the expression data
plotheatmap | Heatmap of expression profiles
prcurve | Computation of a principal curve for a given dimensional reduction representation
procsom | Processing of self-organizing maps for pseudo-temporal expression profiles
reclassify | Reclassification of cells