BluegillJL              Capture histories (2 samples) of Bluegill from
                        Jewett Lake, MI.
BrookTroutTH            Catch-at-age for Tobin Harbor, Isle Royale
                        Brook Trout.
ChinookArg              Lengths and weights for Chinook Salmon from
                        three locations in Argentina.
CodNorwegian            Stock and recruitment data for Norwegian cod,
                        1937-1960.
CutthroatAL             Capture histories (9 samples) of Cutthroat
                        Trout from Auke Lake.
Ecoli                   Population growth of Escherichia coli.
FSA                     Fisheries stock assessment methods and data.
FSAUtils                Capitalizes the first letter of first or all
                        words in a string.
Mirex                   Mirex concentration, weight, capture year, and
                        species of Lake Ontario salmon.
Mmethods                Estimate natural mortality from a variety of
                        empirical methods.
PSDlit                  Gabelhouse five-cell length categories for
                        various species.
PikeNY                  Summarized multiple mark-recapture data for all
                        Northern Pike from Buckhorn Marsh, NY.
PikeNYPartial1          Capture histories (4 samples), in capture
                        history format, of a subset of Northern Pike
                        from Buckhorn Marsh, NY.
SMBassLS                Catch-effort data for Little Silver Lake (Ont)
                        Smallmouth Bass.
SMBassWB                Growth increment data for West Bearskin Lake,
                        MN, Smallmouth Bass.
Schnute                 The four-parameter growth function from Schnute
                        (1981).
SchnuteRichards         The five-parameter growth function from Schnute
                        and Richards (1990).
SpotVA1                 Age and length of spot.
Subset                  Subsets/filters a data frame and drops the
                        unused levels.
Summarize               Summary statistics for a numeric variable.
WR79                    Ages and lengths for a hypothetical sample from
                        Westerheim and Ricker (1979).
WSlit                   All known standard weight equations.
WhitefishLC             Assigned ages from two readers on three
                        structures for Lake Whitefish from Lake
                        Champlain.
addZeroCatch            Adds zeros for catches of species not collected
                        in some sampling events.
ageBias                 Compute and view possible differences between
                        paired sets of ages.
agePrecision            Compute measures of precision among sets of
                        ages.
alkAgeDist              Proportions-at-age from an age-length key
alkIndivAge             Use an age-length key to assign age to
                        individuals in the unaged sample.
alkMeanVar              Mean Values-at-age from an age-length key
alkPlot                 Plots to visualize age-length keys.
binCI                   Confidence intervals for binomial probability
                        of success.
bootstrap               Case bootstrapping and associated S3 methods.
capHistConvert          Convert between capture history data.frame
                        formats.
capHistSum              Summarize capture histories in individual fish
                        format.
catchCurve              Mortality estimates from the descending limb of
                        a catch curve.
chapmanRobson           Computes Chapman-Robson estimates of S and Z.
chooseColors            Create a list of colors from among a variety of
                        color palettes.
col2rgbt                Converts an R color to RGB (red/green/blue)
                        including a transparency (alpha channel).
compIntercepts          Tests for significant differences among all
                        pairs of intercepts in a dummy variable
                        regression.
compSlopes              Tests for significant differences among all
                        pairs of slopes in a dummy variable regression
                        (DVR).
confint.nlsBoot         Associated S3 methods for nlsBoot from
                        nlstools.
depletion               Computes the Leslie or DeLury population
                        estimate from catch and effort data.
diags                   Extract diagonals from a matrix.
dunnTest                Dunn's Kruskal-Wallis Multiple Comparisons.
expandCounts            Repeat individual fish data (including lengths)
                        from tallied counts.
expandLenFreq           Expands a length frequency based on a
                        subsample.
extraTests              Likelihood ratio and extra sum-of-squares
                        tests.
fact2num                Converts "numeric" factor levels to numeric
                        values.
fishR                   Opens web pages associated with the fishR
                        website.
fitPlot                 Fitted model plot for an lm, glm, or nls
                        object.
fsaNews                 Read news and changes for the 'FSA' package.
geomean                 Calculates the geometric mean or geometric
                        standard deviation.
growthModels            Creates a function for a specific
                        parameterization of the von Bertalanffy,
                        Gompertz, Richards, and logistic growth
                        functions.
headtail                Shows rows from the head and tail of a data
                        frame or matrix.
hist.formula            Creates separate histograms by levels.
histFromSum             Create a histogram from a frequency table.
hoCoef                  Performs a hypothesis test that a linear model
                        parameter is equal to a specific value.
hyperCI                 Confidence interval for population size (N) in
                        hypergeometric distribution.
jolly                   Jolly-Seber analysis from multiple
                        mark-recapture events from an open population.
kCounts                 Specific utilities for use in a knitr document.
ksTest                  Kolmogorov-Smirnov Tests.
lagratio                Ratio of lagged observations.
lencat                  Constructs length class/category variable.
logbtcf                 Constructs the correction-factor used when
                        back-transforming log-transformed values.
lwCompPreds             Constructs plots of predicted weights at given
                        lengths among different groups.
mapvalues               Replace specified values in a vector or factor
                        with new values.
mrClosed                Estimate initial population size for single or
                        multiple census mark-recapture data.
nlsTracePlot            Adds model fits from nls iterations to active
                        plot.
oddeven                 Determine if a number is odd or even.
peek                    Peek into (show a subset of) a data frame or
                        matrix.
perc                    Computes the percentage of values in a vector
                        less than or greater than (and equal to) some
                        value.
plotAB                  Construct traditional (Campana-like) age-bias
                        plots.
plotBinResp             Plots a binary response variable versus a
                        quantitative explanatory variable.
poiCI                   Confidence interval for Poisson counts.
psdAdd                  Creates a vector of Gabelhouse lengths for each
                        species in an entire data frame.
psdCI                   Compute confidence intervals for PSD-X and PSD
                        X-Y values.
psdCalc                 Convenience function for calculating PSD-X and
                        PSD X-Y values.
psdPlot                 Length-frequency histogram with Gabelhouse
                        lengths highlighted.
psdVal                  Finds Gabelhouse lengths (for PSD calculations)
                        for a species.
rSquared                Extract the coefficient of determination from a
                        linear model object.
rcumsum                 Computes the prior to or reverse cumulative sum
                        of a vector.
removal                 Population estimates for k-, 3-, or 2-pass
                        removal data.
repeatedRows2Keep       Find non-repeated consecutive rows in a
                        data.frame.
residPlot               Construct a residual plot from lm or nls
                        objects.
se                      Computes standard error of the mean.
srStarts                Finds reasonable starting values for parameters
                        in specific parameterizations of common
                        stock-recruitment models.
stockRecruitment        Creates a function for a specific
                        parameterization of a common stock-recruitment
                        function .
sumTable                Creates a one- or two-way table of summary
                        statistics.
tictactoe               Construct a base tic-tac-toe plot for
                        presenting predator-prey PSD values.
validn                  Finds the number of valid (non-NA) values in a
                        vector.
vbStarts                Find reasonable starting values for a von
                        Bertalanffy growth function.
wrAdd                   Computes a vector of relative weights specific
                        to a species in an entire data frame.
wsVal                   Finds standard weight equation coefficients for
                        a particular species.
