DLMtool-package	DLMtool-package
AAVE	PerformanceMetric
AAVY	PerformanceMetric
addMPs	checkMSE
Albacore	Stock-class-objects
alphaconv	alphaconv
applyMP	applyMP
Atlantic_mackerel	Data-class-objects
avail	avail
AvC	AvC
AvC_MLL	AvC_MLL
barplot.MSE	barplot.MSE
betaconv	alphaconv
BK	BK
BK_CC	BK
BK_ML	BK
BlankSelPlot	BlankSelPlot
Blow_opt	Blow_opt
Bluefin_tuna	Stock-class-objects
Bluefin_tuna_WAtl	Stock-class-objects
Blue_shark	Stock-class-objects
boxplot.Data	boxplot.Data
Butterfish	Stock-class-objects
calcMean	calcMean
CalcMPDynamics	CalcMPDynamics
calcProb	calcProb
CALsimp	CALsimp
Can	Can
CanMP	CanMP
Cant	Can
CC	CC
CC1	CC1
CC2	CC1
CC3	CC1
CC4	CC1
CC5	CC1
char.log-class	char.log-class
cheatsheets	cheatsheets
checkMSE	checkMSE
China_rockfish	Data-class-objects
ChkObj	ChkObj
ChkYrs	ChkYrs
Choose	Choose
ChooseEffort	Choose
ChooseM	Choose
ChooseSelect	Choose
Cobia	Data-class-objects
compplot	compplot
CompSRA	CompSRA
CompSRA4010	CompSRA
CompSRA_	CompSRA_
condmet	condmet
Converge	Converge
COSEWIC_Blow	runCOSEWIC
COSEWIC_Dplot	runCOSEWIC
COSEWIC_Hplot	runCOSEWIC
COSEWIC_Pplot	runCOSEWIC
COSEWIC_report	runCOSEWIC
COSEWIC_tab	runCOSEWIC
COSEWIC_tab_formatted	runCOSEWIC
Cos_thresh_tab	Cos_thresh_tab
cparscheck	cparscheck
Cplot	Cplot
CSRA	CSRA
CSRAfunc	CSRAfunc
CurC	CC1
curE	curE
curE75	curE
cv	cv
DAAC	DCAC
Data-class	Data-class
Data-class-objects	Data-class-objects
Data2csv	Data2csv
DataDescription	DataDescription
DataInit	DataInit
Data_xl	Data_xl
DBSRA	DBSRA
DBSRA4010	DBSRA
DBSRAopt	DBSRAopt
DBSRA_	DBSRA_
DBSRA_40	DBSRA
DCAC	DCAC
DCAC4010	DCAC
DCACs	DCAC
DCAC_	DCAC_
DCAC_40	DCAC
DCAC_ML	DCAC
DD	DD
DD4010	DD
DDe	DDe
DDe75	DDe
DDes	DDe
DD_	DD_
DD_R	DD_R
DecE_Dom	Fleet-class-objects
DecE_HDom	Fleet-class-objects
DecE_NDom	Fleet-class-objects
demofn	demographic2
demographic2	demographic2
DepF	Fratio
derive_beta_par	sample_steepness2
DFO_bar	DFO_bar
DFO_hist	DFO_hist
DFO_plot	DFO_plot
DFO_plot2	DFO_plot2
DFO_proj	DFO_proj
DFO_quant	DFO_quant
DFO_report	DFO_report
DFO_spider	DFO_spider
DFO_tab	DFO_tab
DFO_tab_formatted	DFO_tab_formatted
DLMDataDir	DLMDataDir
DLMdiag	Can
DLMenv	DLMenv
DLMextra	DLMextra
DLMtool	DLMtool-package
dnormal	dnormal
Dom	Dom
DTe40	DTe40
DTe50	DTe40
DynF	DynF
EtargetLopt	EtargetLopt
Example_datafile	Data-class-objects
Fadapt	Fadapt
Fdem	Fdem
Fdem_	Fdem_
Fdem_CC	Fdem
Fdem_ML	Fdem
Fease	Fease
FilterSmooth	FilterSmooth
FlatE_Dom	Fleet-class-objects
FlatE_HDom	Fleet-class-objects
FlatE_NDom	Fleet-class-objects
Fleet-class	Fleet-class
Fleet-class-objects	Fleet-class-objects
FleetDescription	FleetDescription
FMSYref	FMSYref
FMSYref50	FMSYref
FMSYref75	FMSYref
Fratio	Fratio
Fratio4010	Fratio
Fratio_	Fratio_
Fratio_CC	Fratio
Fratio_ML	Fratio
GB_CC	GB_CC
GB_slope	GB_slope
GB_target	GB_target
Gcontrol	Gcontrol
Generic_DecE	Fleet-class-objects
Generic_FlatE	Fleet-class-objects
Generic_Fleet	Fleet-class-objects
Generic_IncE	Fleet-class-objects
Generic_Obs	Obs-class-objects
genSizeCompWrap	genSizeCompWrap
getAFC	getAFC
getBlow	getBlow
getclass	getclass
getEffhist	getEffhist
getfifth	genSizeCompWrap
getFref3	getFref3
getmov2	getmov2
getq3	getq3
getr	getr
getsel	getsel
gettempvar	gettempvar
Growth2OM	Growth2OM
Gulf_blue_tilefish	Data-class-objects
HDAAC	DCAC
Herring	Stock-class-objects
Hist-class	Hist-class
hist2	hist2
ICI	ICI
ICI2	ICI
Imp-class	Imp-class
Imp-class-objects	Imp-class-objects
ImpDescription	ImpDescription
Imprecise_Biased	Obs-class-objects
Imprecise_Unbiased	Obs-class-objects
IncE_HDom	Fleet-class-objects
IncE_NDom	Fleet-class-objects
initialize	initialize-methods
initialize,Data-method	initialize-methods
initialize,DLM_general-method	initialize-methods
initialize,Fease-method	initialize-methods
initialize,Fleet-method	initialize-methods
initialize,MSE-method	initialize-methods
initialize,Obs-method	initialize-methods
initialize,OM-method	initialize-methods
initialize,Stock-method	initialize-methods
initialize-methods	initialize-methods
Input	Input
IOTC_plot	IOTC_plot
Iratio	Iratio
Islope1	Islope1
Islope2	Islope1
Islope3	Islope1
Islope4	Islope1
Islope_	Islope_
IT10	IT5
IT5	IT5
Itarget1	Itarget1
Itarget1_MPA	Itarget1_MPA
Itarget2	Itarget1
Itarget3	Itarget1
Itarget4	Itarget1
ItargetE1	ItargetE1
ItargetE2	ItargetE1
ItargetE3	ItargetE1
ItargetE4	ItargetE1
Itargeteff_	Itargeteff_
Itarget_	Itarget_
ITe10	ITe5
ITe5	ITe5
ITM	ITM
IT_	IT_
iVB	iVB
joinData	joinData
joinMSE	checkMSE
join_plots	join_plots
Kplot	Kplot
L2A	L2A
L95target	Ltarget1
label.class-class	label.class-class
LBSPR	LBSPR
LBSPRgen	LBSPRgen
LBSPR_	LBSPR_
LBSPR_MLL	LBSPR
LH2OM	LH2OM
LHdatabase	LHdatabase
LinInterp	LinInterp
Low_Effort_Non_Target	Fleet-class-objects
Lratio_BHI	Lratio_BHI
Lratio_BHI2	Lratio_BHI
Lratio_BHI3	Lratio_BHI
LSRA	LSRA
LSRA2	LSRA2
LSRA_MCMC_sim	LSRA_MCMC_sim
LSRA_opt	LSRA_opt
LSRA_opt_cpp	LSRA_opt_cpp
LstepCC1	LstepCC1
LstepCC2	LstepCC1
LstepCC3	LstepCC1
LstepCC4	LstepCC1
LstepCE1	LstepCE1
LstepCE2	LstepCE1
Ltarget1	Ltarget1
Ltarget2	Ltarget1
Ltarget3	Ltarget1
Ltarget4	Ltarget1
LtargetE1	LtargetE1
LtargetE4	LtargetE1
LTY	PerformanceMetric
LW2OM	LW2OM
Mackerel	Stock-class-objects
makeMeanMP	makeMeanMP
makePerf	makePerf
makeTransparent	makeTransparent
matlenlim	matlenlim
matlenlim2	matlenlim
MCD	MCD
MCD4010	MCD
mconv	sdconv
minlenLopt1	matlenlim
ML2D	ML2D
movfit_Rcpp	movfit_Rcpp
MPStats	MPStats
MPtype	MPtype
MPurl	MPurl
MRnoreal	MRreal
MRreal	MRreal
MSE-class	MSE-class
MSEDescription	MSEDescription
MSYCalcs	MSYCalcs
NAor0	NAor0
Needed	Can
NFref	FMSYref
NOAA_plot	NOAA_plot
NOAA_plot2	TradePlot
Obs-class	Obs-class
Obs-class-objects	Obs-class-objects
ObsDescription	ObsDescription
OM-class	OM-class
OMDescription	OMDescription
OMdoc	OMdoc
OMexample	OMexample
OMinit	OMinit
OneRep	OneRep
optCPU	optCPU
optMSY	optMSY
optMSY_eq	optMSY_eq
optQ	optQ
ourReefFish	Data-class-objects
Overages	Imp-class-objects
P10	PerformanceMetric
P100	PerformanceMetric
P50	PerformanceMetric
Perfect_Imp	Imp-class-objects
Perfect_Info	Obs-class-objects
PerformanceMetric	PerformanceMetric
plot.Data	plot.Data
plot.Fleet	plot.Stock
plot.Hist	plot.Stock
plot.Imp	plot.Stock
plot.MSE	plot.MSE
plot.Obs	plot.Stock
plot.OM	plot.Stock
plot.pars	plot.Stock
plot.Stock	plot.Stock
plotFleet	plot-Fleet
plotFun	plotFun
plotImp	plot-Imp
plotM	plotM
plotMPA	plotMPA
plotObs	plot-Obs
plotOFL	plotOFL
plotOM	plot-OM
plotSelect	plotSelect
plotStock	plotStock
PMLimit	PMLimit
PMObj	PMLimit
PMobj-class	PMobj-class
PNOF	PerformanceMetric
popdynCPP	popdynCPP
popdynOneTScpp	popdynOneTScpp
Porgy	Stock-class-objects
Pplot	Pplot
Pplot2	Pplot2
Precise_Biased	Obs-class-objects
Precise_Unbiased	Obs-class-objects
predictLH	LH2OM
prob.class-class	prob.class-class
PWhisker	PWhisker
Range	Range
Rcontrol	Rcontrol
Rcontrol2	Rcontrol
RealFease	RealFease
Rec-class	Rec-class
Red_snapper	Data-class-objects
Replace	Replace
replic8	replic8
Report	Report
ReqData	ReqData
Required	Required
Rockfish	Stock-class-objects
runCOSEWIC	runCOSEWIC
runInMP	runInMP
runMP	runMP
runMSE	runMSE
SampleCpars	SampleCpars
SampleFleetPars	SampleFleetPars
SampleImpPars	SampleImpPars
SampleObsPars	SampleObsPars
SampleStockPars	SampleStockPars
sample_steepness2	sample_steepness2
sampy	sampy
SBT1	SBT1
SBT2	SBT1
sdconv	sdconv
Sense	Sense
setup	setup
show,PMobj-method	show-MSE
show,Rec-method	show-Rec
simCAA	simCAA
simCAL	simCAL
SimulatedData	SimulatedData
Simulation_1	Data-class-objects
SketchFun	SketchFun
slotlim	matlenlim
Snapper	Stock-class-objects
Sole	Stock-class-objects
SPmod	SPmod
SPMSY	SPMSY
SPslope	SPslope
SPSRA	SPSRA
SPSRAopt	SPSRA_
SPSRA_	SPSRA_
SPSRA_ML	SPSRA
SRAcomp	SRAcomp
SRAsim	SRAsim
StochasticSRA	StochasticSRA
StochasticSRAcpp	StochasticSRAcpp
Stock-class	Stock-class
Stock-class-objects	Stock-class-objects
StockDescription	StockDescription
STY	PerformanceMetric
Sub	Sub
SubCpars	SubCpars
SubOM	SubOM
summary,Data-method	summary-Data
summary,MSE-method	summary-MSE
TAC	TAC
TACfilter	TACfilter
Targeting_Small_Fish	Fleet-class-objects
Target_All_Fish	Fleet-class-objects
tdlnorm	trlnorm
testOM	testOM
Thresh_tab	Thresh_tab
tiny	tiny
tinyErr	tinyErr
tinyErr,OM-method	tinyErr
Toothfish	Stock-class-objects
Tplot	TradePlot
Tplot2	TradePlot
Tplot2_old	Tplot
Tplot3	TradePlot
Tplot_old	Tplot
TradePlot	TradePlot
TradePlot_old	TradePlot_old
trlnorm	trlnorm
Turing	Turing
updateMSE	checkMSE
userguide	userguide
Uses	Uses
validcpars	validcpars
VOI	VOI
VOI2	VOI2
VOIplot	VOIplot
VOIplot2	VOIplot2
wormplot	wormplot
writeCSV	writeCSV
XL2Data	XL2Data
XL2OM	XL2OM
Yield	PerformanceMetric
YPR	YPR
YPRopt	YPR_
YPR_	YPR_
YPR_CC	YPR
YPR_ML	YPR
