BinMatInput_ordination
                        Example input data containing a consolidated
                        binary matrix with grouping information
BinMatInput_reps        Example input data containing a binary matrix
                        comprising replicate sample pairs
check.data              Checks binary matrix for unwanted characters.
consolidate             Consolidates replicate pairs in a binary
                        matrix.
errors                  Calculates Jaccard and Euclidean error rates.
group.names             Outputs group names specified in the input file
                        for the creation of an nMDS plot.
nmds                    Creates a non-metric multidimensional scaling
                        plot (nMDS).
peak.remove             Removes samples with peaks equal to or less
                        than a specified threshold value.
peaks.consolidated      Calculates peak numbers for a consolidated data
                        set (total, maximum, and minimum).
peaks.original          Calculates peak numbers for the data set with
                        all replicates (total, maximum, and minimum).
scree                   Draws a scree plot.
shepard                 Creates a shepard plot.
upgma                   Draws a hierarchical clustering tree (UPGMA).
