AAmass                  Molecular mass for amino-acids
combineMultFilterNAimput
                        Combine multiple filters on NA-imputed data
convAASeq2mass          Molecular mass for amino-acids
countNoOfCommonPeptides
                        Compare in-silico digested proteomes for unique
                        and shared peptides, counts per protein or as
                        peptides Compare in-silico digested proteomes
                        for unique and shared peptides, counts per
                        protein or as peptides. The in-silico digestion
                        may be performed separately using the package
                        cleaver. Note: input must be list (or multiple
                        names lists) of proteins with their respective
                        peptides (eg by in-silico digestion).
extrSpeciesAnnot        Extract species annotation
massDeFormula           molecular mass from chemical formula
matrixNAinspect         Histogram of content of NAs in matrix
matrixNAneighbourImpute
                        Impute random values to NAs in matrix based on
                        replicates (neighbour) values
plotROC                 Plot ROC curves
razorNoFilter           Filter based on either number of total peptides
                        and specific peptides or number of razor
                        petides
readFasta2              Read file of protein sequences in fasta format
                        Read fasta formatted file (from UniProt) to
                        extract (protein) sequences and name. If
                        'tableOut=TRUE' output may be organized as
                        matrix for separating meta-annotation (eg
                        GeneName, OrganismName, ProteinName) in
                        separate columns.
readMaxQuantFile        Read csv or txt files exported from MS-Angel
                        and Proline
readPDExport            Read tabulated files imported from Thermo
                        ProteomeDiscoverer
readProlineFile         Read csv or txt files exported from MS-Angel
                        and Proline
readUCSCtable           Read annotation files from UCSC
readUniProtExport       Read protein annotation as exported from
                        UniProt batch-conversion
removeSampleInList      Remove samples/columns from list of matrixes
                        Remove samples (ie columns) from every instance
                        of list of matrixes. Note: This function
                        assumes same order of columns in list-elements
                        'listElem' !
summarizeForROC         Summarize statistical test result for plotting
                        ROC-curves
test2grp                t-test each line of 2 groups of data
testRobustToNAimputation
                        Test robust to NA-imputation
