baf.bayes	bayes
baf.model.fit	baf.model.fit
baf.model.points	model_points
baf.types.matrix	type_matrix
chromosome.view	chromosome.view
CP.example	CP.data
cp.plot	cp.plot
cp.plot.contours	cp.plot
example.seqz	example.seqz
find.breaks	breaks
gc.sample.stats	gc
gc.summary.plot	gc
genome.view	chromosome.view
get.ci	cp.plot
mean_gc	gc
median_gc	gc
model.points	model_points
mufreq.bayes	bayes
mufreq.model.fit	baf.model.fit
mufreq.model.points	model_points
mufreq.types.matrix	type_matrix
mutation.table	mutations
plotWindows	plotWindows
read.acgt	read_seqz
read.seqz	read_seqz
segment.breaks	breaks
sequenza.extract	workflow
sequenza.fit	workflow
sequenza.results	workflow
theoretical.baf	theoretical
theoretical.depth.ratio	theoretical
theoretical.mufreq	theoretical
types.matrix	type_matrix
windowBf	windowValues
windowValues	windowValues
