Package: sbpiper
Version: 1.9.0
Date: 2018-06-26
Title: Data Analysis Functions for 'SBpipe' Package
Authors@R: c(
    person("Piero", "Dalle Pezze", email = "piero.dallepezze@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0003-1695-6763"))
    )
Depends: R (>= 3.2.0)
Imports: colorRamps, data.table, factoextra, FactoMineR, ggplot2 (>=
        2.2.0), grDevices, Hmisc, reshape2, scales, stats, stringr,
        utils
Description: Provides an API for analysing repetitive parameter estimations and simulations of
    mathematical models. Examples of mathematical models are Ordinary Differential equations (ODEs) 
    or Stochastic Differential Equations (SDEs) models. Among the analyses for parameter 
    estimation 'sbpiper' calculates statistics and generates plots for parameter density, PCA of the best 
    fits, parameter profile likelihood estimations (PLEs), and 2D parameter PLEs. These results can 
    be generated using all or a subset of the best computed parameter sets. Among the analyses 
    for model simulation 'sbpiper' calculates statistics and generates plots for deterministic 
    and stochastic time courses via cartesian and heatmap plots. Plots for the scan of one or two model 
    parameters can also be generated. This package is primarily used by the software 'SBpipe'. 
    Citation: Dalle Pezze P, Le Novère N. SBpipe: a collection of pipelines for automating 
    repetitive simulation and analysis tasks. BMC Systems Biology. 2017;11:46. <doi:10.1186/s12918-017-0423-3>.
License: MIT + file LICENSE
URL: https://github.com/pdp10/sbpiper
BugReports: https://github.com/pdp10/sbpiper/issues
LazyLoad: true
Collate: 'sbpiper.r' 'sbpiper_ggplot2_themes.r' 'sbpiper_plots.r'
        'sbpiper_sim.r' 'sbpiper_ps1.r' 'sbpiper_ps2.r' 'sbpiper_pe.r'
        'data.r'
RoxygenNote: 6.0.1
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2018-06-26 15:42:51 UTC; dallepep
Author: Piero Dalle Pezze [aut, cre, cph]
    (<https://orcid.org/0000-0003-1695-6763>)
Maintainer: Piero Dalle Pezze <piero.dallepezze@gmail.com>
Repository: CRAN
Date/Publication: 2018-06-26 15:54:28 UTC
Built: R 3.6.3; ; 2020-08-05 08:26:01 UTC; windows
