allIdentical	allIdentical
apply1	summarizeRows
apply2	summarizeRows
asNumMatrix	asNumMatrix
assertColumnName	assertColumnName
assertContrast	assertContrast
assertDesign	assertDesign
assertDesignContrast	assertDesignContrast
assertDir	isDir
assertFile	checkFile
atofMatrix	asNumMatrix
basefilename	extname
bedaInfo	bedaInfo
biomicsPstorePath2URL	biomicsPstorePath2URL
checkDir	isDir
checkFile	checkFile
chosenFew	chosenFew
clearLog	registerLog
closeFileDevice	openFileDevice
closeLoggerConnections	closeLoggerConnections
columnOverlapCoefficient	columnOverlapCoefficient
compTwoVecs	compTwoVecs
countTokens	countTokens
createDir	createDir
cumJaccardDistance	cumJaccardIndex
cumJaccardIndex	cumJaccardIndex
cumOverlapCoefficient	cumOverlapCoefficient
cumOverlapDistance	cumOverlapCoefficient
cumsumprop	cumsumprop
cutInterval	cutInterval
dfFactor	dfFactor
dfFactor2Str	dfFactor2Str
doLog	writeLog
extname	extname
fixWidthStr	fixWidthStr
flushLog	registerLog
getDefaultFontFamily	getDefaultFontFamily
haltifnot	haltifnot
headhead	headhead
headtail	headtail
identicalMatrix	identicalMatrix
identicalMatrixValue	identicalMatrixValue
imatch	imatch
imatchv	imatch
ipmatch	imatch
ipmatchv	imatch
isDebugging	setDebug
isDir	isDir
isError	isError
isIntDebugging	setDebug
isInvarCol	removeInvarCol
isMaxStatRow	keepMaxStatRow
isRocheCompoundID	isRocheCompoundID
isVarCol	removeInvarCol
jaccardDistance	jaccardIndex
jaccardIndex	jaccardIndex
keepMaxStatRow	keepMaxStatRow
keepMaxStatRowInd	keepMaxStatRow
libordie	libordie
list2df	list2df
listOverlapCoefficient	listOverlapCoefficient
longdf2matrix	longdf2matrix
matchColumn	matchColumn
matchColumnIndex	matchColumn
matchColumnName	matchColumnName
matchv	imatch
matrix2longdf	matrix2longdf
mergeInfreqLevelsByCumsumprop	mergeInfreqLevelsByCumsumprop
midentical	midentical
mintersect	munion
mmatch	mmatch
mset	munion
msetdiff	munion
munion	munion
na.false	na.false
naivePairwiseDist	naivePairwiseDist
nField	countTokens
ofactor	ofactor
openFileDevice	openFileDevice
overlapCoefficient	overlapCoefficient
overlapDistance	overlapCoefficient
pAbsLog10Score	pAbsLog10Score
pairwiseJaccardDistance	pairwiseJaccardIndex
pairwiseJaccardIndex	pairwiseJaccardIndex
pairwiseOverlapCoefficient	pairwiseOverlapDistance
pairwiseOverlapDistance	pairwiseOverlapDistance
percentage	percentage
pQnormScore	pQnormScore
print.BEDAinfo	print.BEDAinfo
pScore	pScore
putColsFirst	putColsFirst
pwdecode	pwdecode
pwencode	pwencode
qqmsg	qqmsg
qsystem	qsystem
refactorNum	refactorNum
registerLog	registerLog
relevels	relevels
relevelsByNamedVec	relevelsByNamedVec
relevelsByNotNamedVec	relevelsByNotNamedVec
reload	reload
removeColumns	removeColumns
removeInvarCol	removeInvarCol
replaceColumnName	replaceColumnName
ribiosTempdir	ribiosTempdir
ribiosTempfile	ribiosTempfile
ribiosUtils	ribiosUtils
rmat	rmat
rocheCore	rocheCore
rowscale	rowscale
rowscale.matrix	rowscale.matrix
rsetdiff	rsetdiff
scriptInit	scriptInit
setDebug	setDebug
shortenStr	shortenStr
silencio	silencio
sortAndFilterByCumsumprop	sortAndFilterByCumsumprop
sortByCol	sortByCol
sortByDimnames	sortByDimnames
stringDataFrame2numericMatrix	asNumMatrix
strtoken	strtoken
stubborngc	stubborngc
subsetByColumnName	subsetByColumnName
summarizeCols	summarizeRows
summarizeColumns	summarizeRows
summarizeRows	summarizeRows
tailtail	headhead
trim	trim
ulen	uniqueLength
uniqueLength	uniqueLength
uniqueNonNA	uniqueNonNA
unsetDebug	setDebug
verbose	verbose
whoami	whoami
writeLog	writeLog
