bestRanking             Identify the best ranking
exprMaguire             Gene expression from Maguire et al. RNA-seq
                        data
fitness                 Fitness of gene removal-based submodels with
                        different gene rankings
iMK735                  iMK735 metabolic models in hypoxia and normoxia
metaboGSE               Gene set enrichment analysis
pwDesc                  Description of gene set IDs
relativeExpr            Relative expression data (log2 counts)
rescue                  Rescue a model
rmGenes                 Generate a submodel by removing genes
scoreGeneDel            Structure of Class "scoreGeneDel"
simulateSubmnet         Plot fitness of submodels built by gene removal
                        in a condition
submnet                 Simulation of gene removal-based submodel
                        series with a given ranking
weightReacts            Compute weights of rescue reactions
yarli2GO                GO annotation retrieved from Uniprot
yarliGSE                Gene set enrichment example for Yarrowia
                        lipolytica
yarliSubmnets           Submodel construction example for Yarrowia
                        lipolytica
zscoreExpr              Z-score of expression data
