Package: cyanoFilter
Title: Cyanobacteria Population Identification for Flow Cytometry
Version: 0.1.3
Authors@R: c(person("Oluwafemi", "Olusoji", email = "oluwafemi.olusoji@uhasselt.be", role = c("aut", "cre")),
    person("Aerts", "Marc", email = "marc.aerts@uhasselt.be", role = "ctb"),
    person("Delaender", "Frederik", email = "frederik.delaender@unamur.be", role = "ctb"),
    person("Neyens", "Thomas", email = "thomas.neyens@uhasselt.be", role = "ctb"),
    person("Spaak", "jurg", email = "jurg.spaak@unamur.be", role = "aut"))
Maintainer: Oluwafemi Olusoji <oluwafemi.olusoji@uhasselt.be>
Description: An approach to filter out and/or identify synechococcus type cyanobacteria cells from all particles measured via flow cytometry.
    It combines known characteristics of these cyanobacteria strains alongside gating techniques developed by Mehrnoush, M. et al. (2015) <doi:10.1093/bioinformatics/btu677> 
    in the 'flowDensity' package to identify and separate these cyanobacteria cells from other cell types.
    Aside the gating techniques in the 'flowDensity' package, an EM style clustering technique
    is also developed to identify these cyanobacteria cell populations.
URL: https://github.com/fomotis/cyanoFilter
BugReports: https://github.com/fomotis/cyanoFilter/issues
Depends: R(>= 3.4), Biobase(>= 2.40.0)
Imports: flowCore(>= 1.42.3), flowDensity (>= 1.10.0), graphics(>=
        3.6.0), grDevices(>= 3.6.0), methods(>= 3.5.1), RColorBrewer(>=
        1.1-2), Rdpack(>= 0.11-0), stats(>= 3.6.0), stringr(>= 1.3.1),
        utils(>= 3.6.0)
RdMacros: Rdpack
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Suggests: dplyr, magrittr, knitr, rmarkdown, tidyr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2020-01-09 00:26:57 UTC; lucp9544
Author: Oluwafemi Olusoji [aut, cre],
  Aerts Marc [ctb],
  Delaender Frederik [ctb],
  Neyens Thomas [ctb],
  Spaak jurg [aut]
Repository: CRAN
Date/Publication: 2020-01-09 13:10:11 UTC
Built: R 3.6.3; ; 2020-08-05 04:56:33 UTC; windows
