Package: ctDNAtools
Title: Analyze Circulating Tumor DNA Sequencing Data
Version: 0.4.0
Authors@R: 
    person(given = "Amjad",
           family = "Alkodsi",
           role = c("aut", "cre"),
           email = "amjad.alkodsi@gmail.com",
           comment = c(ORCID = "0000-0003-3528-4683"))
Description: Contains tools to analyze minimal residual disease and cell-free DNA fragmentation from aligned sequencing data.
    More details on the methods can be found in:
    Amjad Alkodsi, Leo Meriranta, Annika Pasanen, Sirpa Leppä (2020) <doi:10.1101/2020.01.27.912790>.
License: MIT + file LICENSE
Depends: R (>= 3.6.0),
Imports: magrittr, dplyr (>= 0.8.3), tidyr (>= 1.0.0), purrr (>=
        0.3.2), Rsamtools (>= 2.0.0), assertthat (>= 0.2.1),
        GenomicRanges, IRanges, GenomeInfoDb, BiocGenerics, BSgenome,
        GenomicAlignments, rlang (>= 0.4.0), Biostrings, methods, furrr
        (>= 0.1.0), ellipsis (>= 0.3.0), VariantAnnotation (>= 1.30.1)
Suggests: BSgenome.Hsapiens.UCSC.hg19, testthat (>= 2.1.0), ggplot2,
        knitr, rmarkdown, covr, pkgdown
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
VignetteBuilder: knitr
URL: https://github.com/alkodsi/ctDNAtools
BugReports: https://github.com/alkodsi/ctDNAtools/issues
NeedsCompilation: no
Packaged: 2020-02-25 21:33:59 UTC; amjad
Author: Amjad Alkodsi [aut, cre] (<https://orcid.org/0000-0003-3528-4683>)
Maintainer: Amjad Alkodsi <amjad.alkodsi@gmail.com>
Repository: CRAN
Date/Publication: 2020-03-04 18:10:02 UTC
Built: R 3.6.3; ; 2020-08-05 06:23:17 UTC; windows
