AncStateEstMatrix       Ancestral Character State Estimation
BlockAligner            Align a phylogenetic matrix block
ChangesInBins           Counts the changes in a series of time bins
ChronoPhyloMorphospacePlot
                        Chronophylomorphospace Plot
Claddis-package         Measuring Morphological Diversity and
                        Evolutionary Tempo
CompactifyMatrix        Collapses matrix to unique character state
                        distributions
CorrectRootTime         Corrects root.time after taxa have been pruned
                        from a tree
Day2016                 Character-taxon matrix from Day et al. 2016
DiscreteCharacterRate   Discrete character rates across trees, time,
                        and character types
DolloSCM                Stochastic Character Map For Dollo Character
EdgeLengthsInBins       Edge-lengths present in time-bins
EdgeMatch               Edge matching function
FindAncestor            Find ancestor
FindLinkedEdges         Find linked edges for a tree
Gauthier1986            Character-taxon matrix from Gauthier 1986
GetAllStateChanges      Finds all state changes on a tree using
                        stochastic character mapping
GetDescendantEdges      Gets descendant edges of an internal node
GetNodeAges             Returns node ages for a time-scaled tree
MakeMorphMatrix         Creates a morphological data file from a matrix
MatrixPruner            Prunes a character matrix of characters or taxa
Michaux1989             Character-taxon matrix from Michaux 1989
MinSpanTreeEdges        Get edges of minimum spanning tree
MorphDistMatrix         Get distance matrices from a cladistic matrix
MorphMatrix2PCoA        Principal Coordinates on a Cladistic Matrix
MorphospacePlot         Plot Morphopace
MultiMorphospacePlot    Plot Multiple Morphopaces
PhyloCharCompletenessInBins
                        Phylogenetic character completeness in
                        time-bins
PlotCharacterChanges    Plots character changes on branches
ReadMorphNexus          Reads in a morphological #NEXUS data file
SafeTaxonomicReduction
                        Safe Taxonomic Reduction
SafeTaxonomicReinsertion
                        Reinsert Safely Removed Taxa Into A Tree
StackPlot               Plot Stacked Ordination Spaces
TrimMorphDistMatrix     Trims a morphological distance matrix
WriteMorphNexus         Writes out a morphological #NEXUS data file
WriteMorphTNT           Writes out a morphological TNT data file
