ConvertXseqOutput       Convert xseq output to a data.frame
EstimateExpression      A mixture modelling approach to estiamte
                        whether a gene is expressed in a study given
                        RNA-seq gene expression data
FilterNetwork           Filter network
GetExpressionDistribution
                        Get the conditional distributions for a set of
                        genes
ImputeKnn               Impute missing values (NAs) using K-nearest
                        neighbour averaging
InferXseqPosterior      Learn xseq parameters given an initialized
                        model
InitXseqModel           The datastructure to store the xseq models
LearnXseqParameter      Learn xseq parameters given an initialized
                        model
NormExpr                Remove the cis-effects of copy number
                        alterations on gene expression
PlotRegulationHeatmap   Heatmap showing the connected genes'
                        dysregulation probabilities
QuantileNorm            Quantile normalize a matrix
SetXseqPrior            Set model paramerter priors
cna.call                TCGA AML SNP6.0 GISTIC copy number alteration
                        calls
cna.logr                TCGA AML SNP6.0 copy number alteration data
expr                    TCGA AML SNP6.0 gene expression data
mut                     TCGA AML somatic mutation data
net                     A networks containing gene associations
