spaMM-package	spaMM
%*%,numeric,ZAXlist-method	ZAXlist
%*%,ZAXlist,Matrix-method	ZAXlist
%*%,ZAXlist,matrix-method	ZAXlist
%*%,ZAXlist,numeric-method	ZAXlist
%*%-methods	ZAXlist
.eval_replicate2	eval_replicate
.HLfit_body_augZXy	spaMM-internal
.solve_IRLS_as_spprec	spaMM-internal
.solve_IRLS_as_ZX	spaMM-internal
adjacency	autoregressive
adjlg	adjlg
adjlgMat	adjlg
AIC	AIC
AIC.HLfit	AIC
anova	anova.HLfit
anova.HLfit	anova.HLfit
AR1	autoregressive
arabidopsis	arabidopsis
as_precision	covStruct
autoregressive	autoregressive
barstyle	options
Beta	HLfit
Beta-distribution-random-effects	HLfit
beta_table	vcov
binomialize	multinomial
blackcap	blackcap
CAR	autoregressive
Cauchy	CauchyCorr
CauchyCorr	CauchyCorr
class:missingOrNULL	ZAXlist
class:ZAXlist	ZAXlist
coef	spaMM-internal
coef.corMatern	corMatern
coef<-	spaMM-internal
coef<-.corMatern	corMatern
COMPoisson	COMPoisson
confint	confint
confint.HLfit	confint
convergence	convergence
corFactor	spaMM-internal
corFactor.corMatern	corMatern
corMatern	corMatern
corMatrix	spaMM-internal
corMatrix.corMatern	corMatern
Corr	vcov
corrHLfit	corrHLfit
corrHLfit_body	spaMM-internal
corrMatrix	corrMatrix
corrMM.LRT	spaMM-internal
corrPars	fixed
corr_family	corr_family
covStruct	covStruct
crack	spaMM-internal
crossprod,ZAXlist,Matrix-method	ZAXlist
crossprod,ZAXlist,matrix-method	ZAXlist
crossprod,ZAXlist,numeric-method	ZAXlist
crossprod-methods	ZAXlist
def_AUGI0_ZX_sparsePrecision	PLS-internals
def_sXaug_EigenDense_QRP_Chol_scaled	PLS-internals
def_sXaug_Matrix_QRP_CHM_scaled	PLS-internals
deviance	extractors
deviance.HLfit	extractors
dev_resids	extractors
DHARMa	post-fit
dim.precision	spaMM-S3
dimnames.bigq	spaMM-internal
dopar	dopar
Earth	make.scaled.dist
EarthChord	make.scaled.dist
etaFix	fixed
eval_replicate	eval_replicate
external-libraries	libraries
extractAIC	AIC
extractAIC.HLfit	AIC
extractors	extractors
family	extractors
family.HLfit	extractors
filled.mapMM	mapMM
fitme	fitme
fitme_body	spaMM-internal
fitted	extractors
fitted.HLfit	extractors
fitted.HLfitlist	multinomial
fixed	fixed
fixedLRT	fixed.LRT
fixef	extractors
fixef.HLfit	extractors
fix_predVar	fix_predVar
formula	extractors
formula.HLfit	extractors
freight	freight
Gamma	inverse.Gamma
geometric	COMPoisson
getCall.HLfit	spaMM-internal
getCovariate	spaMM-internal
getCovariate.corMatern	corMatern
getDistMat	extractors
getPar	spaMM-internal
get_any_IC	AIC
get_cPredVar	get_cPredVar
get_fixefVar	predict
get_from_MME	PLS-internals
get_from_MME.AUGI0_ZX_sparsePrecision	PLS-internals
get_from_MME.default	PLS-internals
get_from_MME.sparseMatrix	PLS-internals
get_from_MME.sXaug_EigenDense_QRP_Chol_scaled	PLS-internals
get_from_MME.sXaug_Matrix_QRP_CHM_scaled	PLS-internals
get_from_MME_default	PLS-internals
get_from_MME_default.Matrix	PLS-internals
get_from_MME_default.matrix	PLS-internals
get_HLCorcall	spaMM-internal
get_inits_from_fit	get_inits_from_fit
get_intervals	predict
get_matrix	get_matrix
get_predCov_var_fix	predict
get_predVar	predict
get_rankinfo	rankinfo
get_ranPars	get_ranPars
get_residVar	predict
get_respVar	predict
get_RLRTSim_args	extractors
get_ZALMatrix	get_matrix
glht	post-fit
good-practice	good-practice
hatvalues	hatvalues.HLfit
hatvalues.HLfit	hatvalues.HLfit
HLCor	HLCor
HLCor.obj	spaMM-internal
HLCor_body	spaMM-internal
HLfit	HLfit
HLfit.obj	spaMM-internal
HLfit_body	spaMM-internal
how	how
how.default	how
how.HLfit	how
IMRF	IMRF
Initialize	spaMM-internal
Initialize.corMatern	corMatern
intervals	predict
inverse.Gamma	inverse.Gamma
is_separated	is_separated
is_separated.formula	is_separated
landMask	seaMask
LevenbergM	options
Loaloa	Loaloa
logDet	spaMM-internal
logDet.corMatern	corMatern
logLik	extractors
logLik.HLfit	extractors
logLik.HLfitlist	multinomial
LRT	anova.HLfit
makeTicks	spaMM-internal
make_scaled_dist	make.scaled.dist
mapMM	mapMM
Matern	Matern.corr
Matern.corr	spaMM-internal
MaternCorr	Matern.corr
MaternCorr.default	Matern.corr
mat_sqrt	mat_sqrt
method	method
missingOrNULL	ZAXlist
missingOrNULL-class	ZAXlist
model.frame.HLfit	extractors
model.matrix.HLfit	extractors
MSFDR	MSFDR
multcomp	post-fit
multi	multinomial
multIMRF	IMRF
multinomial	multinomial
negbin	negbin
niceLabels	spaMM-internal
Nmatrix	scotlip
nobs	extractors
nobs.HLfit	extractors
oceanmask	seaMask
overcat	spaMM-internal
pdep_effects	plot_effect
pedigree	pedigree
phiHGLM	phiHGLM
plot	plot.HL
plot.HLfit	plot.HL
plot_effects	plot_effect
PLS-internals	PLS-internals
Poisson	poisson
post-fit	post-fit
predict	predict
predict.HLfit	predict
Predictor	covStruct
preprocess_fix_corr	predict
print	summary.HL
print.arglist	spaMM-S3
print.corr_family	corr_family
print.fixedLRT	summary.HL
print.HLfit	summary.HL
print.HLfitlist	summary.HL
print.predictions	spaMM-S3
print.predictor	spaMM-S3
print.ranef	extractors
print.spcall	spaMM-S3
print.vcov.HLfit	spaMM-S3
projpath	spaMM-internal
ranCoefs	fixed
random-effects	random-effects
ranef	extractors
ranef.HLfit	extractors
ranFix	fixed
rankinfo	rankinfo
ranPars	fixed
recalc	spaMM-internal
recalc.corMatern	corMatern
refit	update
remove_from_parlist	get_ranPars
resid.model	phiHGLM
residuals	extractors
residuals.HLfit	extractors
response	extractors
rho.mapping	make.scaled.dist
RLRsim	post-fit
salamander	salamander
SAR_WWt	corr_family
scotlip	scotlip
seaMask	seaMask
seeds	seeds
separation	is_separated
simulate	simulate
simulate.HLfit	simulate
simulate.HLfitlist	simulate
small_spde	IMRF
spaMM	spaMM
spaMM-conventions	spaMM-conventions
spaMM-S3	spaMM-S3
spaMM.colors	spaMMcolors
spaMM.filled.contour	spaMM.filled.contour
spaMM.getOption	options
spaMM.options	options
spaMMplot2D	mapMM
spaMM_boot	spaMM_boot
spaMM_Gamma	spaMM-internal
spaMM_glm	GLM.fit
spaMM_glm.fit	GLM.fit
sparse_precision	sparse_precision
str.inla.spde2	IMRF
stripHLfit	stripHLfit
summary	summary.HL
summary.fixedLRT	summary.HL
summary.HLfit	summary.HL
summary.HLfitlist	summary.HL
tcrossprod,ZAXlist,missingOrNULL-method	ZAXlist
tcrossprod-methods	ZAXlist
terms	extractors
terms.HLfit	extractors
Tnegbin	negbin
Tpoisson	poisson
update	update
update.HLfit	update
update_resp	update
VarCorr	vcov
VarCorr.HLfit	vcov
Variogram	spaMM-internal
Variogram.corMatern	corMatern
vcov	vcov
vcov.HLfit	vcov
wafers	wafers
welding	welding
worldcountries	seaMask
ZAXlist	ZAXlist
ZAXlist-class	ZAXlist
