ancestral_nodes         ancestral_nodes
chainsaw                Function to cut the phylogeny to a specified
                        depth from the tip with the greatest distance
                        from the root.
check_partition         Check partition matrix
check_phypartition      check_phypartition
check_similarity        Check similarity matrix
descendant_tips         descendant_tips
dist2sim                Distance to similarity
distance                Generate distance object
distance-class          distance-class
gen2dist                Genetic distance matrix
geneid                  geneid
genevec                 genevec
hs_parameters           Historical species parameters
inddiv                  Calculate individual-level diversity
meta_gamma              Metacommunity gamma diversity
metacommunity           Metacommunity
metacommunity-class     metacommunity-class
metadiv                 Metacommunity-level diversity
norm_alpha              Normalised alpha (low level diversity
                        component)
norm_beta               Normalised beta (low level diversity component)
norm_meta_alpha         Normalised metacommunity alpha diversity
norm_meta_beta          Normalised metacommunity beta diversity
norm_meta_rho           Normalised metacommunity rho diversity
norm_rho                Normalised rho (low level diversity component)
norm_sub_alpha          Normalised subcommunity alpha diversity
norm_sub_beta           Normalised subcommunity beta diversity
norm_sub_rho            Normalised subcommunity rho diversity
phy2branch              Phylogenetic similarity
phy2dist                Phylogenetic pairwise tip distance matrix
phy_abundance           Relative abundance of historical species
phy_struct              Calculate phylogenetic structure matrix
power_mean              Power mean of vector elements
powermean               Calculate power mean
powermean-class         powermean-class
raw_alpha               Raw alpha (low level diversity component)
raw_beta                Raw beta (low level diversity component)
raw_gamma               Gamma (low level diversity component)
raw_meta_alpha          Raw metacommunity alpha diversity
raw_meta_beta           Raw metacommunity beta diversity
raw_meta_rho            Raw metacommunity rho diversity
raw_rho                 Raw rho (low level diversity component)
raw_sub_alpha           Raw subcommunity alpha diversity
raw_sub_beta            Raw subcommunity beta diversity
raw_sub_rho             Raw subcommunity rho diversity
rdiversity-package      rdiversity: diversity measurement in R
relativeentropy         Calculate relative entropy
relativeentropy-class   relativeentropy-class
repartition             Repartition metacommunity
similarity              Generate similarity object
similarity-class        similarity-class
smatrix                 Phylogenetic similarity matrix (ultrametric)
sub_gamma               Subcommunity gamma diversity
subdiv                  Calculate subcommunity-level diversity
summarise               Summary function
tax2dist                Generate taxonomic distance matrix
taxfac                  taxfac
taxid                   taxid
taxmask                 taxmask
taxvec                  taxvec
tbar                    Calculate T_bar
zmatrix                 Similarity matrix
