Dprime                  Get the standardized composite D'.
format_lddf             Format an element of 'mldest()' or 'sldest()'
                        into an upper-triangular matrix.
get_prob_array          Obtain the distribution of genotypes given
                        haplotype frequencies under HWE
is.lddf                 Tests if an argument is a 'lddf' object.
ldest                   Pairwise LD estimation in polyploids.
ldest_comp              Estimates of composite pairwise LD based either
                        on genotype estimates or genotype likelihoods.
ldest_gam               Estimate gametic pair-wise LD using either
                        genotypes or genotype likelihoods.
ldsep-package           Linkage Disequilibrium Shrinkage Estimation for
                        Polyploids
ldshrink                Obtain shrinkage estimates of correlation from
                        output of 'mldest()' or 'sldest()'.
mldest                  Estimate all pair-wise LD's in a collection of
                        SNPs using genotypes or genotype likelihoods.
pbnorm_dist             Returns distribution of proportional bivariate
                        normal.
plot.lddf               Plot the output of 'mldest()' or 'sldest()'
                        using 'corrplot()'
sldest                  Sliding window LD estimation
uit                     Updog fits on the data from Uitdewilligen et.
                        al. (2013)
zshrink                 Shrinks Fisher-z transformed correlation
                        estimates and returns resulting correlation
                        estimates.
