Compositional Analysis of Differentially Expressed Proteins in Cancer

Documentation for package ‘canprot’ version 1.0.0

DESCRIPTION file.
User guides, package vignettes and other documentation.
Code demos. Use demo() to run them.
Package NEWS.

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canprot-package	Compositional Analysis of Differentially Expressed Proteins
.pdat_multi	Get Protein Expression Data
.pdat_osmotic	Get Protein Expression Data
check_IDs	Check UniProt IDs
cleanup	Clean Up Data
CLES	Common Language Effect Size
cplab	Plot Compositional Differences
diffplot	Plot Compositional Differences
Ehplot	Plot Eh
get_colors	Get Colors
get_comptab	Calculate Compositional Differences
GRAVY	Calculate Compositional Metrics for Proteins
groupplots	Plot Potential Diagrams for Groups of Datasets
H2OAA	Calculate Compositional Metrics for Proteins
human	Amino Acid Compositions of Human Proteins
human_aa	Amino Acid Compositions of Human Proteins
human_additional	Amino Acid Compositions of Human Proteins
human_base	Amino Acid Compositions of Human Proteins
human_extra	Amino Acid Compositions of Human Proteins
mergedplot	Plot Potential Diagrams for Groups of Datasets
metrics	Calculate Compositional Metrics for Proteins
mkvig	Compile and View Vignettes from the Command Line
MWAA	Calculate Compositional Metrics for Proteins
pdat_	Get Protein Expression Data
pdat_3D	Get Protein Expression Data
pdat_breast	Get Protein Expression Data
pdat_colorectal	Get Protein Expression Data
pdat_glucose	Get Protein Expression Data
pdat_hypoxia	Get Protein Expression Data
pdat_liver	Get Protein Expression Data
pdat_lung	Get Protein Expression Data
pdat_osmotic_bact	Get Protein Expression Data
pdat_osmotic_euk	Get Protein Expression Data
pdat_osmotic_halo	Get Protein Expression Data
pdat_pancreatic	Get Protein Expression Data
pdat_prostate	Get Protein Expression Data
pdat_secreted	Get Protein Expression Data
pI	Calculate Compositional Metrics for Proteins
protcomp	Protein Compositions
PS	Retrieve Phylostrata for Given UniProt IDs
qdist	Quantile Distributions for One Dataset
rankdiff	Weighted Difference of Sums of Ranks
rankplot	Plot Ranking of Chemical Affinities
recomp	Recompute Protein Compositions
uniprot_updates	Amino Acid Compositions of Human Proteins
xsummary	Summarize Compositional Differences
xsummary2	Summarize Compositional Differences
xsummary3	Summarize Compositional Differences
ZCAA	Calculate Compositional Metrics for Proteins