compdr                  Computation of dimensional reduction
                        representations
diffexpnb               Function for differential expression analysis
dptTraj                 Inferenence of diffusion pseudotime (DPT) for
                        all cells on a differentiation trajectory
fateBias                Computation of fate bias
filterset               Function filtering expression data
gene2gene               Comparative plot of the expression levels of
                        two genes
getFeat                 Feature selection based on differentially
                        expressed genes
getPart                 Inference of a cell type partition
getsom                  Topological ordering of pseudo-temporal
                        expression profiles
impGenes                Extract genes with high importance values for
                        random forest classification
intestine               Single-cell transcriptome data of intestinal
                        epithelial cells
plotFateMap             Plot dimensional reduction representation of
                        the expression data
plotdiffgenesnb         Function for plotting differentially expressed
                        genes
plotexpression          Plotting of pseudo-temporal expression profiles
plotexpressionProfile   Plotting smoothed pseudo-temporal expression
                        profiles for groups of genes
plotheatmap             Heatmap of expression profiles
prcurve                 Computation of a principal curve for a given
                        dimensional reduction representation
procsom                 Processing of self-organizing maps for
                        pseudo-temporal expression profiles
reclassify              Reclassification of cells
