CollapsABEL-package	CollapsABEL
collapsabel-package	CollapsABEL
%||%	getOrElse-operator
.FilePath	FilePath-class
.PlGwasC	PlGwasC-class
.PlInfoC	PlInfoC-class
.RbedInfoC	RbedInfoC-class
.ReadInfo	ReadInfo-class
alphaNumeric	alphaNumeric
asBigMatrix	asBigMatrix
asBigMatrix,data.frame,ANY,ANY,ANY,ANY,ANY,ANY,ANY,logical-method	asBigMatrix
asBigMatrix,matrix,ANY,ANY,ANY,ANY,ANY,ANY,ANY,logical-method	asBigMatrix
asBigMatrix,vector,ANY,ANY,ANY,ANY,ANY,ANY,ANY,logical-method	asBigMatrix
assocFilter	assocFilter
baseName	baseName
baseName,FilePath-method	baseName
bedcollr	bedcollr
bedSizeCorrect	bedSizeCorrect
bimCorrectTypes	bimCorrectTypes
bin2DescFilename	bin2DescFilename
binPhe	binPhe
bmAddCol	bmAddCol
bmAttachBin	bmAttachBin
bmConvertFun	bmConvertFun
bmFilename	bmFilename
bmFilepath	bmFilepath
bytesSnp	bytesSnp
changeByMap	changeByMap
charify	charify
checkFileExist	checkFileExist
chExt	chExt
cmh	cmh
colClasses	colClasses
colCors	colCors
CollapsABEL	CollapsABEL
collapsabel	CollapsABEL
collapse	collapse
collapseMat	collapseMat
collClear	collClear
collenv	collenv
connectSnpPair	connectSnpPair
contrastData	contrastData
contrastPlot	contrastPlot
correctDesc	correctDesc
correctTypes	correctTypes_methods
correctTypes_methods	correctTypes_methods
covarNames	covarNames
cytoband	cytoband
datToVec	datToVec
desc2BinFilename	desc2BinFilename
dir.create2	dir.create2
dirName	dirName
dirName,FilePath-method	dirName
eprint	eprint
evalFile	evalFile
famCorrectTypes	famCorrectTypes
fidIid	fidIid
file.create2	file.create2
filePath	filePath
FilePath-class	FilePath-class
fileSize	fileSize
gcdhBmCreate	gcdhBmCreate
gcdhDir	gcdhDir
gcdhPower	gcdhPower
gcdhRegion	gcdhRegion
gcdhReport	gcdhReport
getHaplo	getHaplo
getHaplos	getHaplos
getOrElse-operator	getOrElse-operator
getQuery	getQuery
getr2	getr2
glm2	glm2
glmIter	glmIter
gwasDat	gwasDat
gwasDir	gwasDir
gwasLog	gwasLog
gwasOut	gwasOut
gwasOutStem	gwasOutStem
gwasR	gwasR
gwasRDS	gwasRDS
head2	head2
headPhe	headPhe
isBinary	isBinary
isS4Class	isS4Class
isSetup	isSetup
isSetupRbed	isSetupRbed
isSQLite3	isSQLite3
lagDistance	lagDistance
lenCheck	lenCheck
listEqual	listEqual
listGwasTags	listGwasTags
listTags	listGwasTags
loadGwas	loadGwas
makePhe	makePhe
manhattanData	manhattanData
manhattanPlot	manhattanPlot
nIndivApprPl	nIndivApprPl
nIndivPl	nIndivPl
nonExistentFiles	nonExistentFiles
nSnpPl	nSnpPl
numVectorSQLRepr	numVectorSQLRepr
permutePhe	permutePhe
plGwas	plGwas
plGwas,PlGwasC,character,character,character,character,logical,list-method	plGwas
plGwas,RbedInfoC,character,character,character,character,logical,list-method	plGwas
plGwas,RbedInfoC,character,character,character,character,logical,missing-method	plGwas
plGwas,RbedInfoC,character,character,character,character,missing,list-method	plGwas
plGwas,RbedInfoC,character,character,character,character,missing,missing-method	plGwas
plGwas,RbedInfoC,character,character,missing,character,missing,missing-method	plGwas
PlGwasC-class	PlGwasC-class
plInfo	plInfo
plInfo,missing,character,logical-method	plInfo
plInfo,missing,character,missing-method	plInfo
plInfo,PlInfoC,character,logical-method	plInfo
plInfo,PlInfoC,character,missing-method	plInfo
PlInfoC-class	PlInfoC-class
plinkr	plinkr
plTrim	plTrim
qq	qq
qq2	qq2
qqmulti	qqmulti
randNormDat	randNormDat
randomString	randomString
randomStrings	randomStrings
rbedInfo	rbedInfo
RbedInfoC-class	RbedInfoC-class
read.phe.table	read.phe.table
readAssoc	readAssoc
readBed	readBed
readBed,RbedInfoC,ANY,logical,logical-method	readBed
readBed,RbedInfoC,ANY,logical,missing-method	readBed
readBed,RbedInfoC,ANY,missing,logical-method	readBed
readBed,RbedInfoC,ANY,missing,missing-method	readBed
readBed,RbedInfoC,missing,logical,logical-method	readBed
readBed,RbedInfoC,missing,logical,missing-method	readBed
readBed,RbedInfoC,missing,missing,logical-method	readBed
readBed,RbedInfoC,missing,missing,missing-method	readBed
readBim	readBim
readBmBin	readBmBin
readDesc	readDesc
readFam	readFam
readFunFactory	readFunFactory
readGwasOut	readGwasOut
readInfo	readInfo
readInfo,character,character-method	readInfo
readInfo,character,missing-method	readInfo
ReadInfo-class	ReadInfo-class
readLiteral	readLiteral
readLogistic	readLogistic
readPhe	readPhe
readPlinkOut	readPlinkOut
readQassoc	readQassoc
realBedSize	realBedSize
removeTag	removeTag
reprClasses	reprClasses
rmFilesByStem	rmFilesByStem
runGcdh	runGcdh
runGwas	runGwas
runTypeI	runTypeI
saveDesc	saveDesc
sendQuery	sendQuery
setOptModel	setOptModel
setup	setup
setupRbed	setupRbed
shiftBed	shiftBed
shiftedStem	shiftedStem
slurp	slurp
snpPos	snpPos
snpRowId	snpRowId
spit	spit
sqliteFilePl	sqliteFilePl
stopFormat	stopFormat
strConcat	strConcat
strVectorRepr	strVectorRepr
strVectorSQLRepr	strVectorSQLRepr
systemFormat	systemFormat
tail2	head2
theoBedSize	theoBedSize
validPhe	validPhe
write.phe.table	write.phe.table
