# Process and Analyze Agilent Cary 620 FTIR Microscope Images

## Documentation for package ‘uFTIR’ version 0.1.2

- DESCRIPTION file.

## Help Pages

as.clipper | As Clipper
clipmask-class | Class holding info for the clipper
clipper | Clipper
get_profile | Get profile
get_profile-method | Get profile
get_profile_all | Get profile
get_profile_sinfo | Get profile
get_profile_tile | Get profile
highlight_substance | Highlight a selected substance
mask_sam | Mask SAM
matrix_sam | Perform SAM between to matrices
MosaicGetRef.wavealign | Methods to resample the wavenumbers
mosaic_chunk | Mosaic chunk
mosaic_compose | Mosaic compose
mosaic_info | Mosaic Info
mosaic_sam | Mosaic SAM
plot-method | Plotting Objects
plot_tile | Plotting Objects
preprocess | Tile Preprocess
preprocess-method | Tile Preprocess
primpke | Example library
rgdal_polygonize | GDALPolygonize in R
SAM-class | Sam Prediction
sam_load | Sam load
sam_write | Write a sam object to disk
Smooth-class | Smooth
smooth_sam | Smooth a Spectral Angle Mapper output
SpectralInfo-class | Spectral info
SpectralPack-class | Spectral Pack
SpectralReference-class | Spectral Reference Class
summary-method | Method to summarize 'SAM' or 'Smooth' objects.
summary_sam | Method to summarize 'SAM' or 'Smooth' objects.
Tile-class | Tile
TileRead.wavealign | Methods to resample the wavenumbers
tile_base_corr | Baseline correction
tile_read | Single tile read
tile_sam | Spectral Angle Mapper
toClip | Visual clipper
uFTIR | Process and analyze Agilent Cary 620 FTIR Microscope images
wavealign | Methods to resample the wavenumbers
wavealign-method | Methods to resample the wavenumbers