Package: tidyMicro
Title: A Pipeline for Microbiome Analysis and Visualization
Version: 1.43
Date: 2020-03-17
Authors@R: c(person("Charlie", "Carpenter", role = c("aut", "cre"),
           email = "charles.carpenter@cuanschutz.edu"),
           person("Dan", "Frank", role = "aut", email = "daniel.frank@cuanschutz.edu"),
           person("Kayla", "Williamson", role = "aut", email = "kayla.3.williamson@cuanschutz.edu"), 
           person("Rachel", "Johnson", role = "ctb", email = "rachel.johnson@cuanschutz.edu"))
Maintainer: Charlie Carpenter <charles.carpenter@cuanschutz.edu>
Description: A reliable alternative to popular microbiome analysis R packages. We provide standard tools as well as novel extensions on standard analyses to improve interpretability and the analyst’s ability to communicate results, all while maintaining object malleability to encourage open source collaboration.
Depends: R (>= 3.5.0), tidyverse (>= 1.3.0)
Imports: magrittr (>= 1.5.0), ggrepel (>= 0.8.1), MASS (>= 7.3-51.4),
        VGAM (>= 1.1-2), rlang (>= 0.3.4), car (>= 3.0-3), lme4 (>=
        1.1-21), vegan (>= 2.5-5), Matrix (>= 1.2-17), cowplot (>=
        0.9.4), lsr (>= 0.5), shapes (>= 1.2.4), Evomorph (>= 0.9),
        ThreeWay (>= 1.1.3), factoextra (>= 1.0.5), ade4 (>= 1.7-13),
        scatterplot3d (>= 0.3-41), gridExtra (>= 2.3), plotly (>=
        4.9.0), png (>= 0.1-7), latex2exp(>= 0.4.0), broom (>= 0.5.0),
        plyr (>= 1.8.0), dplyr (>= 0.8.0), ggplot2 (>= 3.2.0), purrr
        (>= 0.3.0), stringr (>= 1.4.0), tibble (>= 2.1.0), tidyr (>=
        1.0.0), scales (>= 1.1.0)
Suggests: knitr, markdown, roxygen2, rmarkdown
Encoding: UTF-8
License: GPL-3
LazyData: true
RoxygenNote: 7.1.0
BugReports: https://github.com/CharlieCarpenter/tidyMicro
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2020-03-26 18:48:17 UTC; charlescarpenter
Author: Charlie Carpenter [aut, cre],
  Dan Frank [aut],
  Kayla Williamson [aut],
  Rachel Johnson [ctb]
Repository: CRAN
Date/Publication: 2020-03-28 14:20:02 UTC
Built: R 4.1.0; ; 2020-08-03 15:14:24 UTC; windows
