Package: tcgsaseq
Type: Package
Title: Time-Course Gene Set Analysis for RNA-Seq Data
Version: 1.8.1
Date: 2018-12-06
Authors@R: c(person("Denis", "Agniel", role = c("aut"),
                    email = "denis.agniel@gmail.com"),
	           person("Boris P.", "Hejblum", role = c("aut", "cre"),
	                  email = "boris.hejblum@u-bordeaux.fr"),
	           person("Marine", "Gauthier", role = c("aut"),
	                  email = "marine.gauthier@u-bordeaux.fr"))
Depends: R (>= 3.0.2)
Imports: CompQuadForm, ggplot2, graphics, GSA, KernSmooth, stats,
        statmod, utils
Suggests: limma, edgeR, DESeq2, S4Vectors, knitr, rmarkdown, testthat,
        covr
Description: Analyze RNA-seq data with variance component score test accounting 
    for data heteroscedasticity through precision weights. Perform both gene-wise and gene set
    analyses, and can deal with longitudinal data. Method is detailed in: Agniel D & Hejblum BP (2017) 
    Variance component score test for time-course gene set analysis of longitudinal RNA-seq data, 
    Biostatistics, 18(4):589-604.
LazyData: true
License: GPL-2 | file LICENSE
BugReports: https://github.com/denisagniel/tcgsaseq/issues
Encoding: UTF-8
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2018-12-06 23:39:59 UTC; borishejblum
Author: Denis Agniel [aut],
  Boris P. Hejblum [aut, cre],
  Marine Gauthier [aut]
Maintainer: Boris P. Hejblum <boris.hejblum@u-bordeaux.fr>
Repository: CRAN
Date/Publication: 2018-12-07 00:50:03 UTC
Built: R 4.1.0; ; 2020-08-03 13:12:32 UTC; windows
