# A Method for Simulating Data from Perturbed Biological Pathways

## Documentation for package ‘simPATHy’ version 0.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

chimera | Chimera data
easyLookDys | Dysregulation summary
easyLookShiny | Visual dysregulation summary
fitSgraph | Estimate covariance matrix of a graphical model
generatePath | Find one path in a graph
getPathShiny | Choose a path in a graph from an interactive shiny app
graphNELD3-shiny | Shiny bindings for plotGraphNELD3
graphNELD3Output | Shiny bindings for plotGraphNELD3
makePositiveDefinite | Positive definite matrix
plotCorGraph | Plot correlation or partial correlation matrix
plotGraphNELD3 | Dynamic plot of a graph
renderGraphNELD3 | Shiny bindings for plotGraphNELD3
simPATHy | Simulate data from a graphical model
SMLEdecomposable | Local Maximum Likelihood Estimation