# Spectral Clustering-Based Method for Identifying B Cell Clones

## Documentation for package ‘scoper’ version 1.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

as.data.frame-method | S4 class containing clonal assignments and summary data
ExampleDb | Example database
hierarchicalClones | Hierarchical clustering-based method for partitioning Ig sequences into clones.
identicalClones | Identical clustering-based method for partitioning Ig sequences into clones.
plot-method | S4 class containing clonal assignments and summary data
plotCloneSummary | Plot clonal clustering summary
print-method | S4 class containing clonal assignments and summary data
scoper | The SCOPer package
ScoperClones | S4 class containing clonal assignments and summary data
ScoperClones-class | S4 class containing clonal assignments and summary data
ScoperClones-method | S4 class containing clonal assignments and summary data
spectralClones | Spectral clustering-based method for partitioning Ig sequences into clones.
summary-method | S4 class containing clonal assignments and summary data