pomp-package	pomp-package
%>%	pipe
abc	abc
abc,abcd_pomp-method	abc
abc,ANY-method	abc
abc,data.frame-method	abc
abc,missing-method	abc
abc,pomp-method	abc
abc,probed_pomp-method	abc
Abc-class	listie
abc-data.frame	abc
abc-pomp	abc
abcList-class	listie
accumulators	accumulators
accumvars	accumulators
as,bsmcd_pomp-method	as_data_frame
as,Csnippet-method	csnippet
as,kalmand_pomp-method	as_data_frame
as,listie-method	as_data_frame
as,pfilterd_pomp-method	as_data_frame
as,probed_pomp-method	as_data_frame
as,wpfilterd_pomp-method	as_data_frame
as-csnippet	csnippet
as.data.frame	as_data_frame
as.data.frame.abcList	as_data_frame
as.data.frame.bsmcd_pomp	as_data_frame
as.data.frame.kalmand_pomp	as_data_frame
as.data.frame.mif2List	as_data_frame
as.data.frame.pfilterd_pomp	as_data_frame
as.data.frame.pfilterList	as_data_frame
as.data.frame.pmcmcList	as_data_frame
as.data.frame.pomp	as_data_frame
as.data.frame.pompList	as_data_frame
as.data.frame.probed_pomp	as_data_frame
as.data.frame.wpfilterd_pomp	as_data_frame
as.pomp	as_pomp
bake	bake
basic_probes	basic_probes
blowflies	blowflies
blowflies1	blowflies
blowflies2	blowflies
bsflu	bsflu
bsmc2	bsmc2
bsmc2,ANY-method	bsmc2
bsmc2,data.frame-method	bsmc2
bsmc2,missing-method	bsmc2
bsmc2,pomp-method	bsmc2
bsmc2-data.frame	bsmc2
bsmc2-pomp	bsmc2
bspline.basis	bsplines
bsplines	bsplines
c.Abc	concat
c.Mif2	concat
c.Pfilter	concat
c.Pmcmc	concat
c.Pomp	concat
coef	coef
coef,listie-method	coef
coef,missing-method	coef
coef,objfun-method	coef
coef,pomp-method	coef
coef-listie	coef
coef-objfun	coef
coef-pomp	coef
coef<-	coef
coef<-,missing-method	coef
coef<-,pomp-method	coef
coef<--pomp	coef
coerce,bsmcd_pomp,data.frame-method	as_data_frame
coerce,Csnippet,character-method	csnippet
coerce,kalmand_pomp,data.frame-method	as_data_frame
coerce,listie,data.frame-method	as_data_frame
coerce,objfun,data.frame-method	as_data_frame
coerce,objfun,pomp-method	as_pomp
coerce,pfilterd_pomp,data.frame-method	as_data_frame
coerce,pomp,data.frame-method	as_data_frame
coerce,probed_pomp,data.frame-method	as_data_frame
coerce,probe_match_objfun,probed_pomp-method	probe
coerce,spect_match_objfun,spectd_pomp-method	spect
coerce,wpfilterd_pomp,data.frame-method	as_data_frame
coerce-objfun-data.frame	as_data_frame
coerce-objfun-pomp	as_pomp
coerce-pomp-data.frame	as_data_frame
coerce-probe_match_objfun-probed_pomp	probe
coerce-spect_match_objfun-spectd_pomp	spect
concat	concat
concat,Abc-method	concat
concat,Mif2-method	concat
concat,Pfilter-method	concat
concat,Pmcmc-method	concat
concat,Pomp-method	concat
cond.logLik	cond_logLik
cond.loglik	cond_logLik
cond.logLik,ANY-method	cond_logLik
cond.logLik,bsmcd_pomp-method	cond_logLik
cond.logLik,kalmand_pomp-method	cond_logLik
cond.logLik,missing-method	cond_logLik
cond.logLik,pfilterd_pomp-method	cond_logLik
cond.logLik,wpfilterd_pomp-method	cond_logLik
cond.logLik-bsmcd_pomp	cond_logLik
cond.logLik-kalmand_pomp	cond_logLik
cond.logLik-pfilterd_pomp	cond_logLik
cond.logLik-wpfilterd_pomp	cond_logLik
continue	continue
continue,abcd_pomp-method	continue
continue,ANY-method	continue
continue,mif2d_pomp-method	continue
continue,missing-method	continue
continue,pmcmcd_pomp-method	continue
continue-abcd_pomp	continue
continue-mif2d_pomp	continue
continue-pmcmcd_pomp	continue
covariate_table	covariate_table
covariate_table,ANY-method	covariate_table
covariate_table,character-method	covariate_table
covariate_table,missing-method	covariate_table
covariate_table,numeric-method	covariate_table
covariate_table-character,covariate_table,character-method	covariate_table
covariate_table-numeric,covariate_table,numeric-method	covariate_table
covmat	covmat
covmat,abcd_pomp-method	covmat
covmat,abcList-method	covmat
covmat,ANY-method	covmat
covmat,missing-method	covmat
covmat,pmcmcd_pomp-method	covmat
covmat,pmcmcList-method	covmat
covmat,probed_pomp-method	covmat
covmat-abcd_pomp	covmat
covmat-abcList	covmat
covmat-pmcmcd_pomp	covmat
covmat-pmcmcList	covmat
covmat-probed_pomp	covmat
Csnippet	csnippet
Csnippet-class	csnippet
dacca	dacca
design	design
deulermultinom	distributions
discrete_time	rprocess_spec
distributions	distributions
dmeasure	dmeasure
dmeasure,ANY-method	dmeasure
dmeasure,missing-method	dmeasure
dmeasure,pomp-method	dmeasure
dmeasure-pomp	dmeasure
dmeasure_spec	dmeasure_spec
dprior	dprior
dprior,ANY-method	dprior
dprior,missing-method	dprior
dprior,pomp-method	dprior
dprior-pomp	dprior
dprocess	dprocess
dprocess,ANY-method	dprocess
dprocess,missing-method	dprocess
dprocess,pomp-method	dprocess
dprocess-pomp	dprocess
dprocess_spec	dprocess_spec
eakf	kalman
eakf,ANY-method	kalman
eakf,data.frame-method	kalman
eakf,missing-method	kalman
eakf,pomp-method	kalman
eakf-data.frame	kalman
eakf-pomp	kalman
ebola	ebola
ebolaModel	ebola
ebolaWA2014	ebola
eff.sample.size	eff_sample_size
eff.sample.size,ANY-method	eff_sample_size
eff.sample.size,bsmcd_pomp-method	eff_sample_size
eff.sample.size,missing-method	eff_sample_size
eff.sample.size,pfilterd_pomp-method	eff_sample_size
eff.sample.size,wpfilterd_pomp-method	eff_sample_size
eff.sample.size-bsmcd_pomp	eff_sample_size
eff.sample.size-pfilterd_pomp	eff_sample_size
eff.sample.size-wpfilterd_pomp	eff_sample_size
enkf	kalman
enkf,ANY-method	kalman
enkf,data.frame-method	kalman
enkf,missing-method	kalman
enkf,pomp-method	kalman
enkf-data.frame	kalman
enkf-pomp	kalman
euler	rprocess_spec
ewcitmeas	measles
ewmeas	measles
expit	transformations
filter.mean	filter_mean
filter.mean,ANY-method	filter_mean
filter.mean,kalmand_pomp-method	filter_mean
filter.mean,missing-method	filter_mean
filter.mean,pfilterd_pomp-method	filter_mean
filter.mean-kalmand_pomp	filter_mean
filter.mean-pfilterd_pomp	filter_mean
filter.traj	filter_traj
filter.traj,ANY-method	filter_traj
filter.traj,missing-method	filter_traj
filter.traj,pfilterd_pomp-method	filter_traj
filter.traj,pfilterList-method	filter_traj
filter.traj,pmcmcd_pomp-method	filter_traj
filter.traj,pmcmcList-method	filter_traj
filter.traj-pfilterd_pomp	filter_traj
filter.traj-pfilterList	filter_traj
filter.traj-pmcmcd_pomp	filter_traj
filter.traj-pmcmcList	filter_traj
flow	flow
flow,ANY-method	flow
flow,missing-method	flow
flow,pomp-method	flow
flow-pomp	flow
forecast	forecast
forecast,ANY-method	forecast
forecast,kalmand_pomp-method	forecast
forecast,missing-method	forecast
forecast-kalmand_pomp	forecast
freeze	bake
gillespie	rprocess_spec
gillespie_hl	rprocess_spec
gompertz	gompertz
hitch	hitch
inv_log_barycentric	transformations
kalman	kalman
listie	listie
listie-class	listie
load	load
logit	transformations
logLik	loglik
logLik,ANY-method	loglik
logLik,bsmcd_pomp-method	loglik
logLik,kalmand_pomp-method	loglik
logLik,listie-method	loglik
logLik,missing-method	loglik
logLik,nlf_objfun-method	loglik
logLik,objfun-method	loglik
logLik,pfilterd_pomp-method	loglik
logLik,pmcmcd_pomp-method	loglik
logLik,probed_pomp-method	loglik
logLik,spect_match_objfun-method	loglik
logLik,wpfilterd_pomp-method	loglik
logLik-bsmcd_pomp	loglik
logLik-kalmand_pomp	loglik
logLik-nlf_objfun	loglik
logLik-objfun	loglik
logLik-pfilterd_pomp	loglik
logLik-pmcmcd_pomp	loglik
logLik-probed_pomp	loglik
logLik-spect_match_objfun	loglik
logLik-wpfilterd_pomp	loglik
logmeanexp	logmeanexp
log_barycentric	transformations
LondonYorke	measles
lookup	lookup
map	skeleton_spec
measles	measles
melt	melt
melt,pomp-method	melt
mif2	mif2
mif2,ANY-method	mif2
mif2,data.frame-method	mif2
mif2,mif2d_pomp-method	mif2
mif2,missing-method	mif2
mif2,pfilterd_pomp-method	mif2
mif2,pomp-method	mif2
Mif2-class	listie
mif2-data.frame	mif2
mif2-mif2d_pomp	mif2
mif2-pfilterd_pomp	mif2
mif2-pomp	mif2
mif2List-class	listie
mvn.diag.rw	proposals
mvn.rw	proposals
mvn.rw.adaptive	proposals
nlf	nlf
nlf_objfun	nlf
nlf_objfun,ANY-method	nlf
nlf_objfun,data.frame-method	nlf
nlf_objfun,missing-method	nlf
nlf_objfun,nlf_objfun-method	nlf
nlf_objfun,pomp-method	nlf
nlf_objfun-data.frame	nlf
nlf_objfun-nlf_objfun	nlf
nlf_objfun-pomp	nlf
objfun	objfun
obs	obs
obs,pomp-method	obs
obs-pomp	obs
onestep	rprocess_spec
ou2	ou2
parameter_trans	parameter_trans
parameter_trans,ANY,ANY-method	parameter_trans
parameter_trans,ANY,missing-method	parameter_trans
parameter_trans,character,character-method	parameter_trans
parameter_trans,Csnippet,Csnippet-method	parameter_trans
parameter_trans,function,function-method	parameter_trans
parameter_trans,missing,ANY-method	parameter_trans
parameter_trans,missing,missing-method	parameter_trans
parameter_trans,NULL,NULL-method	parameter_trans
parameter_trans,pomp_fun,pomp_fun-method	parameter_trans
parameter_trans-character,character	parameter_trans
parameter_trans-Csnippet,Csnippet	parameter_trans
parameter_trans-function,function	parameter_trans
parameter_trans-missing,missing	parameter_trans
parmat	parmat
partrans	partrans
partrans,ANY-method	partrans
partrans,missing-method	partrans
partrans,pomp-method	partrans
partrans-pomp	partrans
parus	parus
periodic.bspline.basis	bsplines
pfilter	pfilter
pfilter,ANY-method	pfilter
pfilter,data.frame-method	pfilter
pfilter,missing-method	pfilter
pfilter,objfun-method	pfilter
pfilter,pfilterd_pomp-method	pfilter
pfilter,pomp-method	pfilter
Pfilter-class	listie
pfilter-data.frame	pfilter
pfilter-objfun	pfilter
pfilter-pfilterd_pomp	pfilter
pfilter-pomp	pfilter
pfilterd_pomp	pfilter
pfilterd_pomp-class	pfilter
pfilterList-class	listie
pipe	pipe
plot	plot
plot,Abc-method	plot
plot,abcd_pomp-method	plot
plot,abcList-method	plot
plot,bsmcd_pomp-method	plot
plot,Mif2-method	plot
plot,mif2d_pomp-method	plot
plot,mif2List-method	plot
plot,missing-method	plot
plot,pfilterd_pomp-method	plot
plot,Pmcmc-method	plot
plot,pmcmcd_pomp-method	plot
plot,pmcmcList-method	plot
plot,pomp-method	plot
plot,pomp_plottable-method	plot
plot,probed_pomp-method	plot
plot,probe_match_objfun-method	plot
plot,spectd_pomp-method	plot
plot,spect_match_objfun-method	plot
plot,wpfilterd_pomp-method	plot
plot-Abc	plot
plot-bsmcd_pomp	plot
plot-Mif2	plot
plot-pfilterd_pomp	plot
plot-Pmcmc	plot
plot-pomp	plot
plot-probed_pomp	plot
plot-probe_match_objfun	plot
plot-spectd_pomp	plot
plot-spect_match_objfun	plot
plot-wpfilterd_pomp	plot
pmcmc	pmcmc
pmcmc,ANY-method	pmcmc
pmcmc,data.frame-method	pmcmc
pmcmc,missing-method	pmcmc
pmcmc,pfilterd_pomp-method	pmcmc
pmcmc,pmcmcd_pomp-method	pmcmc
pmcmc,pomp-method	pmcmc
Pmcmc-class	listie
pmcmc-data.frame	pmcmc
pmcmc-pfilterd_pomp	pmcmc
pmcmc-pmcmcd_pomp	pmcmc
pmcmc-pomp	pmcmc
pmcmcList-class	listie
pomp	pomp
pomp,package	pomp-package
Pomp-class	listie
pomp-class	pomp_class
pompExample	pomp_examp
pompExamples	pomp_examp
pompList-class	listie
pompLoad	load
pompLoad,pomp-method	load
pompLoad-pomp	load
pompUnload	load
pompUnload,pomp-method	load
pompUnload-pomp	load
pomp_example	pomp_examp
pomp_examples	pomp_examp
pomp_fun	pomp_fun
pomp_fun,character-method	pomp_fun
pomp_fun,Csnippet-method	pomp_fun
pomp_fun,function-method	pomp_fun
pomp_fun,missing-method	pomp_fun
pomp_fun,pomp_fun-method	pomp_fun
pred.mean	pred_mean
pred.mean,ANY-method	pred_mean
pred.mean,kalmand_pomp-method	pred_mean
pred.mean,missing-method	pred_mean
pred.mean,pfilterd_pomp-method	pred_mean
pred.mean-kalmand_pomp	pred_mean
pred.mean-pfilterd_pomp	pred_mean
pred.var	pred_var
pred.var,ANY-method	pred_var
pred.var,missing-method	pred_var
pred.var,pfilterd_pomp-method	pred_var
pred.var-pfilterd_pomp	pred_var
print	print
print,listie-method	print
print,pomp_fun-method	print
print,unshowable-method	print
prior_spec	prior_spec
probe	probe
probe,ANY-method	probe
probe,data.frame-method	probe
probe,missing-method	probe
probe,objfun-method	probe
probe,pomp-method	probe
probe,probed_pomp-method	probe
probe,probe_match_objfun-method	probe
probe-data.frame	probe
probe-objfun	probe
probe-pomp	probe
probe-probed_pomp	probe
probe-probe_match_obfjun	probe
probe.acf	basic_probes
probe.ccf	basic_probes
probe.marginal	basic_probes
probe.match	probe_match
probe.mean	basic_probes
probe.median	basic_probes
probe.nlar	basic_probes
probe.period	basic_probes
probe.quantile	basic_probes
probe.sd	basic_probes
probe.var	basic_probes
probe_objfun	probe_match
probe_objfun,ANY-method	probe_match
probe_objfun,data.frame-method	probe_match
probe_objfun,missing-method	probe_match
probe_objfun,pomp-method	probe_match
probe_objfun,probed_pomp-method	probe_match
probe_objfun,probe_match_objfun-method	probe_match
probe_objfun-data.frame	probe_match
probe_objfun-pomp	probe_match
probe_objfun-probed_pomp	probe_match
probe_objfun-probe_match_objfun	probe_match
profileDesign	design
proposals	proposals
pStop	pStop
pStop_	pStop
pWarn	pStop
pWarn_	pStop
reexports	melt
resample	resample
reulermultinom	distributions
rgammawn	distributions
ricker	ricker
rinit	rinit
rinit,ANY-method	rinit
rinit,missing-method	rinit
rinit,pomp-method	rinit
rinit-pomp	rinit
rinit_spec	rinit_spec
rmeasure	rmeasure
rmeasure,ANY-method	rmeasure
rmeasure,missing-method	rmeasure
rmeasure,pomp-method	rmeasure
rmeasure-pomp	rmeasure
rmeasure_spec	rmeasure_spec
rprior	rprior
rprior,ANY-method	rprior
rprior,missing-method	rprior
rprior,pomp-method	rprior
rprior-pomp	rprior
rprocess	rprocess
rprocess,ANY-method	rprocess
rprocess,missing-method	rprocess
rprocess,pomp-method	rprocess
rprocess-pomp	rprocess
rprocess_spec	rprocess_spec
runifDesign	design
rw.sd	rw_sd
rw2	rw2
sannbox	sannbox
saved.states	saved_states
saved.states,ANY-method	saved_states
saved.states,missing-method	saved_states
saved.states,pfilterd_pomp-method	saved_states
saved.states,pfilterList-method	saved_states
saved.states-pfilterd_pomp	saved_states
saved.states-pfilterList	saved_states
show	show
show,abcd_pomp-method	show
show,bsmcd_pomp-method	show
show,covartable-method	show
show,discreteRprocPlugin-method	show
show,eulerRprocPlugin-method	show
show,gillespieRprocPlugin-method	show
show,kalmand_pomp-method	show
show,listie-method	show
show,mapPlugin-method	show
show,mif2d_pomp-method	show
show,nlfd_pomp-method	show
show,onestepRprocPlugin-method	show
show,partransPlugin-method	show
show,pfilterd_pomp-method	show
show,pmcmcd_pomp-method	show
show,pomp-method	show
show,pomp_fun-method	show
show,probed_pomp-method	show
show,rprocPlugin-method	show
show,skelPlugin-method	show
show,spectd_pomp-method	show
show,unshowable-method	show
show,vectorfieldPlugin-method	show
simulate	simulate
simulate,data.frame-method	simulate
simulate,missing-method	simulate
simulate,objfun-method	simulate
simulate,pomp-method	simulate
simulate-data.frame	simulate
simulate-missing	simulate
simulate-objfun	simulate
simulate-pomp	simulate
sir	sir
sir2	sir
sir_models	sir
skeleton	skeleton
skeleton,ANY-method	skeleton
skeleton,missing-method	skeleton
skeleton,pomp-method	skeleton
skeleton-pomp	skeleton
skeleton_spec	skeleton_spec
sliceDesign	design
sobolDesign	design
solibs<-	load
solibs<-,pomp-method	load
solibs<--pomp	load
spect	spect
spect,ANY-method	spect
spect,data.frame-method	spect
spect,missing-method	spect
spect,objfun-method	spect
spect,pomp-method	spect
spect,spectd_pomp-method	spect
spect,spect_match_objfun-method	spect
spect-data.frame	spect
spect-objfun	spect
spect-pomp	spect
spect-spectd_pomp	spect
spect-spect_match_objfun	spect
spect.match	spect_match
spect_objfun	spect_match
spect_objfun,ANY-method	spect_match
spect_objfun,data.frame-method	spect_match
spect_objfun,missing-method	spect_match
spect_objfun,pomp-method	spect_match
spect_objfun,spectd_pomp-method	spect_match
spect_objfun,spect_match_objfun-method	spect_match
spect_objfun-data.frame	spect_match
spect_objfun-pomp	spect_match
spect_objfun-spectd_pomp	spect_match
spect_objfun-spect_match_objfun	spect_match
spy	spy
spy,ANY-method	spy
spy,missing-method	spy
spy,pomp-method	spy
states	states
states,pomp-method	states
states-pomp	states
stew	bake
summary	summary
summary,objfun-method	summary
summary,probed_pomp-method	summary
summary,spectd_pomp-method	summary
summary-objfun	summary
summary-probed_pomp	summary
summary-spectd_pomp	summary
systematic_resample	resample
time	time
time,missing-method	time
time,pomp-method	time
time-pomp	time
time<-	time
time<-,pomp-method	time
time<--pomp	time
timezero	timezero
timezero,ANY-method	timezero
timezero,missing-method	timezero
timezero,pomp-method	timezero
timezero-pomp	timezero
timezero<-	timezero
timezero<-,ANY-method	timezero
timezero<-,missing-method	timezero
timezero<-,pomp-method	timezero
timezero<--pomp	timezero
traces	traces
traces,Abc-method	traces
traces,abcd_pomp-method	traces
traces,abcList-method	traces
traces,ANY-method	traces
traces,Mif2-method	traces
traces,mif2d_pomp-method	traces
traces,mif2List-method	traces
traces,missing-method	traces
traces,Pmcmc-method	traces
traces,pmcmcd_pomp-method	traces
traces,pmcmcList-method	traces
traces-Abc	traces
traces-abcd_pomp	traces
traces-abcList	traces
traces-Mif2	traces
traces-mif2d_pomp	traces
traces-mif2List	traces
traces-Pmcmc	traces
traces-pmcmcd_pomp	traces
traces-pmcmcList	traces
traj.match	traj_match
trajectory	trajectory
trajectory,ANY-method	trajectory
trajectory,missing-method	trajectory
trajectory,pomp-method	trajectory
trajectory,traj_match_objfun-method	trajectory
trajectory-pomp	trajectory
trajectory-traj_match_objfun	trajectory
traj_objfun	traj_match
traj_objfun,ANY-method	traj_match
traj_objfun,data.frame-method	traj_match
traj_objfun,missing-method	traj_match
traj_objfun,pomp-method	traj_match
traj_objfun,traj_match_objfun-method	traj_match
traj_objfun-data.frame	traj_match
traj_objfun-pomp	traj_match
traj_objfun-traj_match_objfun	traj_match
transformations	transformations
undefined	undefined
undefined,pomp_fun-method	undefined
undefined,rprocPlugin-method	undefined
undefined,skelPlugin-method	undefined
userdata	userdata
vectorfield	skeleton_spec
verhulst	verhulst
window	window
window,pomp-method	window
window-pomp	window
workhorses	workhorses
wpfilter	wpfilter
wpfilter,ANY-method	wpfilter
wpfilter,data.frame-method	wpfilter
wpfilter,missing-method	wpfilter
wpfilter,pomp-method	wpfilter
wpfilter,wpfilterd_pomp-method	wpfilter
wpfilter-data.frame	wpfilter
wpfilter-pomp	wpfilter
wpfilter-wpfilterd_pomp	wpfilter
wpfilterd_pomp	wpfilter
wpfilterd_pomp-class	wpfilter
[,listie-method	listie
[-listie	listie
