# Generated by roxygen2: do not edit by hand

S3method(plot,phyloregion)
export(EDGE)
export(Matrix)
export(PD)
export(beta_core)
export(beta_diss)
export(choropleth)
export(coldspots)
export(collapse_range)
export(dense2long)
export(dense2sparse)
export(evol_distinct)
export(fishnet)
export(get_clades)
export(hexcols)
export(hotspots)
export(indicators)
export(infomap)
export(long2dense)
export(long2sparse)
export(map_trait)
export(match_phylo_comm)
export(mean_dist)
export(optimal_phyloregion)
export(phylo_endemism)
export(phylobeta)
export(phylobeta_core)
export(phylobuilder)
export(phyloregion)
export(plot.phyloregion)
export(plot_NMDS)
export(plot_swatch)
export(points2comm)
export(polys2comm)
export(random_species)
export(raster2comm)
export(read.community)
export(select_linkage)
export(selectbylocation)
export(sparse2dense)
export(sparse2long)
export(sparseMatrix)
export(text_NMDS)
export(timeslice)
export(weighted_endemism)
importFrom(Matrix,Diagonal)
importFrom(Matrix,Matrix)
importFrom(Matrix,as.matrix)
importFrom(Matrix,colSums)
importFrom(Matrix,crossprod)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(Matrix,tcrossprod)
importFrom(Matrix,tril)
importFrom(ape,Nnode)
importFrom(ape,Ntip)
importFrom(ape,branching.times)
importFrom(ape,di2multi)
importFrom(ape,drop.tip)
importFrom(ape,getMRCA)
importFrom(ape,is.rooted)
importFrom(ape,is.ultrametric)
importFrom(ape,keep.tip)
importFrom(ape,label2table)
importFrom(ape,node.depth.edgelength)
importFrom(ape,reorder.phylo)
importFrom(ape,stripLabel)
importFrom(betapart,beta.multi)
importFrom(betapart,beta.pair)
importFrom(betapart,phylo.beta.multi)
importFrom(betapart,phylo.beta.pair)
importFrom(colorspace,hex)
importFrom(colorspace,hex2RGB)
importFrom(colorspace,mixcolor)
importFrom(colorspace,polarLUV)
importFrom(grDevices,as.graphicsAnnot)
importFrom(grDevices,chull)
importFrom(grDevices,hcl.colors)
importFrom(grDevices,rgb)
importFrom(grDevices,xy.coords)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.default)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(graphics,segments)
importFrom(graphics,strheight)
importFrom(graphics,strwidth)
importFrom(graphics,text)
importFrom(graphics,xinch)
importFrom(graphics,yinch)
importFrom(igraph,cluster_infomap)
importFrom(igraph,communities)
importFrom(igraph,graph_from_incidence_matrix)
importFrom(igraph,membership)
importFrom(methods,as)
importFrom(methods,is)
importFrom(parallel,mclapply)
importFrom(phangorn,Ancestors)
importFrom(phangorn,Descendants)
importFrom(phangorn,add.tips)
importFrom(phangorn,getRoot)
importFrom(raster,"res<-")
importFrom(raster,bind)
importFrom(raster,crs)
importFrom(raster,extent)
importFrom(raster,getValues)
importFrom(raster,ncell)
importFrom(raster,raster)
importFrom(raster,rasterToPolygons)
importFrom(raster,rasterize)
importFrom(raster,res)
importFrom(raster,text)
importFrom(raster,values)
importFrom(raster,xyFromCell)
importFrom(sp,"coordinates<-")
importFrom(sp,"proj4string<-")
importFrom(sp,CRS)
importFrom(sp,Polygon)
importFrom(sp,Polygons)
importFrom(sp,SpatialPolygons)
importFrom(sp,SpatialPolygonsDataFrame)
importFrom(sp,coordinates)
importFrom(sp,merge)
importFrom(sp,over)
importFrom(sp,proj4string)
importFrom(sp,split)
importFrom(sp,spsample)
importFrom(stats,aggregate)
importFrom(stats,as.dist)
importFrom(stats,complete.cases)
importFrom(stats,cophenetic)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,hclust)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(stats,reorder)
importFrom(utils,object.size)
importFrom(utils,read.csv)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importMethodsFrom(raster,text)
importMethodsFrom(sp,plot)
