Package: outbreaker2
Version: 1.1.1
Date: 2020-01-31
Title: Bayesian Reconstruction of Disease Outbreaks by Combining
        Epidemiologic and Genomic Data
Authors@R: c(person("Thibaut", "Jombart",
                    email = "thibautjombart@gmail.com",
		    role = c("aut")),
	     person("Finlay", "Campbell",
	            email = "finlaycampbell93@gmail.com",
		    role = c("aut", "cre")),
	     person("Rich", "Fitzjohn",
	            email = "r.fitzjohn@imperial.ac.uk",
		    role = c("aut")),
	     person("Gerry", "Tonkin-Hill",
	            email = "gqt20@cam.ac.uk",
		    role = c("ctb")),
	     person("Alexis", "Robert",
	            email = "alexis.robert@lshtm.ac.uk",
		    role = c("ctb")))
Maintainer: Finlay Campbell <finlaycampbell93@gmail.com>
Description: Bayesian reconstruction of disease outbreaks using epidemiological
    and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser
    C and Ferguson N. 2014. <doi:10.1371/journal.pcbi.1003457>. Campbell, F,
    Cori A, Ferguson N, Jombart T. 2019. <doi:10.1371/journal.pcbi.1006930>.
License: MIT + file LICENSE
Suggests: coda, microbenchmark, testthat, knitr, rmarkdown, igraph,
        epicontacts
Depends: R (>= 3.5.0)
Imports: utils, methods, stats, grDevices, Rcpp, ape, ggplot2,
        magrittr, visNetwork
LazyData: true
LinkingTo: Rcpp
Encoding: UTF-8
RoxygenNote: 6.1.1
SystemRequirements: C++11
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2020-02-07 12:01:37 UTC; fc1915
Author: Thibaut Jombart [aut],
  Finlay Campbell [aut, cre],
  Rich Fitzjohn [aut],
  Gerry Tonkin-Hill [ctb],
  Alexis Robert [ctb]
Repository: CRAN
Date/Publication: 2020-02-07 17:10:05 UTC
Built: R 4.1.0; x86_64-w64-mingw32; 2020-08-03 13:02:46 UTC; windows
Archs: i386, x64
